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ZIRC
ZFIN ID: ZDB-GENE-030131-9475
Gene Name: sorting nexin 17
Gene Symbol: snx17
Sequence Ontology ID : SO:0001217

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Previous Names: si:ch211-101l18.2, wu:fb67g03 (1), wu:fb67g09, wu:fc27g08 (1), wu:fj81d04 (1)

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(Including Attributions)
Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have phosphatidylinositol binding activity. Predicted to be involved in intracellular protein transport and retrograde transport, endosome to plasma membrane. Predicted to localize to  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Hatching:Long-pec (48.0h-60.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la013801Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH snx17 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH snx17 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process intracellular protein transport (more)
    Cellular Component cytoplasmic vesicle (more)
    Molecular Function phosphatidylinositol binding (more)
    GO Terms (all 13)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA snx17-201 (1) 4379
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM snx17 No data available
    MARKER RELATIONSHIPS
    snx17 Contained in: [BAC] CH211-101L18 (order this)
    snx17 Encodes: [EST] fb67g03, fb67g09 (1), fc27g08, fj81d04
    [cDNA] MGC:194432 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001045157 (1) 1936 bp
    Genomic GenBank:BX276101 (1) 167149 bp
    Select Tool
    Polypeptide UniProtKB:Q5RID7 (1) 473 aa
    Sequence Clusters UniGene:154550 (1)
    Sequence Information (all 25)
    ORTHOLOGY for snx17 ( Chr: 20 )
    CITATIONS (32)