ZFIN ID: ZDB-GENE-030131-9180
Gene Name: synaptojanin 1
Gene Symbol: synj1
Sequence Ontology ID : SO:0000704

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Previous Names: fb02f11, fi15a11, no optokinetic response c, nrc, slacker (1), slak (1), wu:fb02f11, wu:fi15a11

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(Including Attributions)
Location: Chr: 10 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 6 figures from 3 publications
Wild-type Stages, Structures: Larval:Protruding-mouth (72.0h-96.0h, 3.5mm) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
a14 Point Mutation Unknown Premature Stop
  • Zebrafish International Resource Center (ZIRC) (order this)
  • s564 Unknown Unknown Unknown ENU
    sa8515 Point Mutation Unknown Splice Site ENU
    sa12222 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21748 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21749 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa27618 Point Mutation Unknown Premature Stop ENU
    sa34917 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41672 Point Mutation Unknown Missense, Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • tc1882ta Point Mutation Donor Splice Site of Exon 2 Splice Site
    tQ296X Point Mutation Unknown Unknown
    tW943X Point Mutation Unknown Unknown
    PHENOTYPE
    Data: 19 figures from 7 publications
    Observed in:
    DISEASE ASSOCIATED WITH synj1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    early-onset Parkinson's disease 20 Parkinson disease 20, early-onset 615530
    Epileptic encephalopathy, early infantile, 53 617389
    DISEASE ASSOCIATED WITH synj1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chemical synaptic transmission (more)
    Molecular Function phosphatidylinositol phosphate 4-phosphatase activity (more)
    GO Terms (all 14)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000300 (1)
  • InterPro:IPR000504 (1)
  • InterPro:IPR002013 (1)
  • InterPro:IPR005135 (1)
  • InterPro:IPR012677 (1)
  • InterPro:IPR015047 (1)
  • InterPro:IPR034971 (1)
  • InterPro:IPR034972 (1)
  • InterPro:IPR035979 (1)
  • InterPro:IPR036691 (1)
  • PROSITE:PS50102 (1)
  • PROSITE:PS50275 (1)
  • Pfam:PF02383 (1)
  • Pfam:PF03372 (1)
  • Pfam:PF08952 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA synj1-001 (1) 7800
    ncRNA synj1-002 (1) 759
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM synj1 No data available
    MARKER RELATIONSHIPS
    synj1Contained in: [BAC] DKEY-5G14 (1) (order this)
    synj1Encodes: [EST] fb02f11, fi15a11
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007030 (1) 4864bp
    Genomic GenBank:CT027781 (1) 171719bp
    Select Tool
    Polypeptide UniProtKB:E9QHF3 (1) 1308aa
    Sequence Clusters UniGene:132732 (1)
    Sequence Information (all 44)
    OTHER synj1 GENE PAGES
  • Alliance (1)
  • Gene:337236 (1)
  • VEGA:OTTDARG00000031101 (1)
  • ORTHOLOGY for synj1 (Chr: 10)
    CITATIONS (42)