ZFIN ID: ZDB-GENE-030131-9180
Gene Name: synaptojanin 1
Gene Symbol: synj1
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: fb02f11, fi15a11, no optokinetic response c, nrc, slacker (1), slak (1), wu:fb02f11, wu:fi15a11

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 10 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 6 figures from 3 publications
Wild-type Stages, Structures: Larval:Protruding-mouth (72.0h-96.0h, 3.5mm) to Adult (90d-730d, breeding adult)
  brain, hair cell, inner ear, neuromast hair cell (all 9) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
a14 Point Mutation Unknown Premature Stop
  • Zebrafish International Resource Center (ZIRC) (order this)
  • s564 Unknown Unknown Unknown ENU
    sa8515 Point Mutation Unknown Splice Site ENU
    sa12222 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21748 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21749 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa27618 Point Mutation Unknown Premature Stop ENU
    sa34917 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa41672 Point Mutation Unknown Splice Site, Nonsynonymous ENU
    tc1882ta Point Mutation Donor Splice Site of Exon 2 Splice Site
    tQ296X Point Mutation Unknown Unknown
    tW943X Point Mutation Unknown Unknown
    PHENOTYPE
    Data: 19 figures from 7 publications
    Observed in: chemical synaptic transmission, eye, musculoskeletal movement, nervous system (all 21) expand
    DISEASE ASSOCIATED WITH synj1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    early-onset Parkinson disease 20 Parkinson disease 20, early-onset 615530
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chemical synaptic transmission (more)
    Molecular Function phosphatidylinositol phosphate 4-phosphatase activity (more)
    GO Terms (all 14)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000300 (1)
  • InterPro:IPR000504 (1)
  • InterPro:IPR002013 (1)
  • InterPro:IPR005135 (1)
  • InterPro:IPR015047 (1)
  • InterPro:IPR034971 (1)
  • InterPro:IPR034972 (1)
  • InterPro:IPR035979 (1)
  • InterPro:IPR036691 (1)
  • PROSITE:PS50102 (1)
  • PROSITE:PS50275 (1)
  • Pfam:PF02383 (1)
  • Pfam:PF03372 (1)
  • Pfam:PF08952 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA synj1-001 (1) 7800
    ncRNA synj1-002 (1) 759
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Ab1-synj1 (1)
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM synj1 No data available
    MARKER RELATIONSHIPS
    synj1Contained in: [BAC] DKEY-5G14 (1) (order this)
    synj1Encodes: [EST] fb02f11, fi15a11
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007030 (1) 4864bp
    Genomic GenBank:CT027781 (1) 171719bp
    Select Tool
    Polypeptide UniProtKB:E7FFE3 (1) 1389aa
    Sequence Clusters UniGene:132732 (1)
    Sequence Information (all 45)
    OTHER synj1 GENE PAGES
  • Alliance (1)
  • Gene:337236 (1)
  • VEGA:OTTDARG00000031101 (1)
  • Ensembl(GRCz10):ENSDARG00000025011 (1)
  • ORTHOLOGY for synj1 (Chr: 10)
    CITATIONS (40)