ZFIN ID: ZDB-GENE-030131-9003
Gene Name: SR-related CTD-associated factor 4a
Gene Symbol: scaf4a    Nomenclature History

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Previous Names: fa96d07, si:dkey-50p8.3, wu:fa96d07 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 10 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Orthologous to human SCAF4 (SR-related CTD associated factor 4).
Genome Resources: Alliance (1),  Gene:567501 (1),  Ensembl(GRCz11):ENSDARG00000077093 (2)
GENE EXPRESSION
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa736 Point Mutation Unknown Missense, Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa5829 Point Mutation Unknown Premature Stop ENU
    sa13563 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21738 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa24871 Point Mutation Unknown Premature Stop ENU
    sa24872 Point Mutation Unknown Premature Stop ENU
    sa34908 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38801 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41664 Point Mutation Unknown Missense, Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH scaf4a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH scaf4a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Molecular Function nucleic acid binding (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000504 RNA recognition motif domain
    Domain IPR006569 CID domain
    Domain IPR006903 RNA polymerase II-binding domain
    Homologous_superfamily IPR008942 ENTH/VHS
    Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    Homologous_superfamily IPR035979 RNA-binding domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA scaf4a-202 (1)    Ensembl 3968
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM scaf4a No data available
    MARKER RELATIONSHIPS
    scaf4a Contained in: [BAC] CH211-250C16 (1), DKEY-50P8 (1) (order this)
    scaf4a Encodes: [EST] fa96d07
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_690795 (1)
    Genomic GenBank:AL837524 (1) 202158 bp Blast at MegaBLAST
    Polypeptide UniProtKB:E7F4U8 (1) 1070 aa
    Sequence Information (all 21)
    ORTHOLOGY for scaf4a ( Chr: 10 )
    CITATIONS (19)