ZFIN ID: ZDB-GENE-030131-8720
Gene Name: pentraxin 3, long a
Gene Symbol: ptx3a
Sequence Ontology ID : SO:0000704

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Previous Names: fb05a06, sb:eu1077, si:ch211-272f3.3, wu:fb05a06

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(Including Attributions)
Location: Chr: 18 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have complement component C1q binding activity; predicted to be involved in innate immune response; predicted to localize to the extracellular space; orthologous to human PTX3 (pentraxin  ...
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 7 figures (21 images) from Thisse et al., 2005 [eu1077]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa17589 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ptx3a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ptx3a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY No data available
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001759 (1)
  • InterPro:IPR013320 (1)
  • InterPro:IPR030476 (1)
  • PROSITE:PS00289 (1)
  • PROSITE:PS51828 (1)
  • Pfam:PF00354 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ptx3a-001 (1) 2164
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ptx3a No data available
    MARKER RELATIONSHIPS
    ptx3aContained in: [BAC] CH211-232P17 (1) (order this), CH211-272F3 (1) (order this)
    ptx3aEncodes: [EST] eu1077 (1), fb05a06, fb04g11 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_005159231 (1)
    Genomic GenBank:BX255879 173755bp
    Select Tool
    Polypeptide UniProtKB:A3KPN4 (1) 447aa
    Sequence Clusters UniGene:76284 (1)
    Sequence Information (all 19)
    OTHER ptx3a GENE PAGES
  • Alliance (1)
  • Gene:101887125 (1)
  • VEGA:OTTDARG00000013483 (1)
  • Ensembl(GRCz11):ENSDARG00000068275 (2)
  • ORTHOLOGY for ptx3a (Chr: 18)
    CITATIONS (17)