ZFIN ID: ZDB-GENE-030131-8512
Gene Name: ribosomal protein L21
Gene Symbol: rpl21    Nomenclature History

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Previous Names: wu:fb13h07, wu:fc74e02, zgc:86669

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 24 Mapping Details/Browsers
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to localize to the cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in hypotrichosis 12. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL21 (ribosomal protein L21).
Genome Resources: Alliance (1),  Gene:336568 (1),  Ensembl(GRCz11):ENSDARG00000010516 (1)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6906305]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH rpl21 HUMAN ORTHOLOG
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
hypotrichosis 12 Alliance Hypotrichosis 12 615885
DISEASE ASSOCIATED WITH rpl21 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process translation (more)
Cellular Component ribosome (more)
Molecular Function structural constituent of ribosome (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Conserved_site IPR018259 Ribosomal protein L21e, conserved site
Family IPR001147 Ribosomal protein L21e
Homologous_superfamily IPR008991 Translation protein SH3-like domain superfamily
Homologous_superfamily IPR036948 Ribosomal protein L21 superfamily
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA rpl21-201 (1)    Ensembl 617
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM rpl21 No data available
MARKER RELATIONSHIPS
rpl21 Contained in: [BAC] CH211-202A8 (1)
rpl21 Encodes: [EST] fb13h07, fc74e02, IMAGE:6906305 (1)
[cDNA] MGC:86669 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001002155 (1) 595 nt
Genomic GenBank:AL929009 (1) 208279 nt Blast at MegaBLAST
Polypeptide UniProtKB:Q6IQQ0 (1) 160 aa
Sequence Information (all 13)
ORTHOLOGY for rpl21 ( Chr: 24 )
CITATIONS (20)