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ZIRC
ZFIN ID: ZDB-GENE-030131-8486
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Gene Name: si:ch211-202a12.4
Gene Symbol: si:ch211-202a12.4    Nomenclature History

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Previous Names: fb13c03, ubc (1), wu:fb13c03

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to have protein tag and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to localize to the cytoplasm and nucleus.
Genome Resources: Alliance (1),  Gene:336542 (1),  Ensembl(GRCz11):ENSDARG00000002369 (1)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la025082Tg Transgenic Insertion Unknown Unknown DNA
sa33681 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH si:ch211-202a12.4 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH si:ch211-202a12.4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process modification-dependent protein catabolic process (more)
    Cellular Component cytoplasm (more)
    Molecular Function protein tag (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000626 (1)
  • InterPro:IPR019954 (1)
  • InterPro:IPR019956 (1)
  • InterPro:IPR029071 (1)
  • PROSITE:PS00299 (1)
  • PROSITE:PS50053 (1)
  • Pfam:PF00240 (1)
    • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA si:ch211-202a12.4-001 (1) 1650
    Select Tool
    Browsers: NCBI
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM si:ch211-202a12.4 No data available
    MARKER RELATIONSHIPS
    si:ch211-202a12.4 Contained in: [BAC] CH211-202A12 (1) (order this)
    si:ch211-202a12.4 Encodes: [EST] fb13c03
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA GenBank:CO931237 (1) 876 bp
    Select Tool
    Genomic GenBank:AL953908 (1) 193129 bp
    Select Tool
    Polypeptide UniProtKB:B0R189 (1) 459 aa
    Select Tool
    Sequence Clusters UniGene:104734 (1)
    Sequence Information (all 13)
    ORTHOLOGY for si:ch211-202a12.4 ( Chr: 5 )
    CITATIONS (20)