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ZIRC
ZFIN ID: ZDB-GENE-030131-8415
Gene Name: collagen, type I, alpha 2
Gene Symbol: col1a2
Sequence Ontology ID : SO:0001217

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Previous Names: alpha2(I) (1), hm:zehn2357, wu:fa98d05 (1), wu:fa99g10 (1), wu:fb04c08, wu:fb11d06, zehn2357

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have extracellular matrix structural constituent. Involved in response to mechanical stimulus and skeletal system development. Predicted to localize to the collagen type I trimer and  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
dmh15 Point Mutation Unknown Nonsynonymous ENU
ihb230 Small Deletion Exon 14 Unknown CRISPR
la013496Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa1763 Point Mutation Unknown Splice Site ENU
    sa17981 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32257 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36897 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH col1a2 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    osteogenesis imperfecta type 2 Osteogenesis imperfecta, type II 166210
    osteogenesis imperfecta type 3 Osteogenesis imperfecta, type III 259420
    osteogenesis imperfecta type 4 Osteogenesis imperfecta, type IV 166220
    osteoporosis {Osteoporosis, postmenopausal} 166710
    Ehlers-Danlos syndrome, arthrochalasia type, 2 617821
    Ehlers-Danlos syndrome, cardiac valvular type 225320
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process response to mechanical stimulus (more)
    Cellular Component collagen trimer (more)
    Molecular Function extracellular matrix structural constituent (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000885 (1)
  • InterPro:IPR008160 (1)
  • PROSITE:PS51461 (1)
  • Pfam:PF01391 (1)
  • Pfam:PF01410 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col1a2-201 (1) 5750
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    MARKER RELATIONSHIPS
    col1a2 Contained in: [BAC] DKEY-104M9 (1) (order this)
    col1a2 Encodes: [EST] fa98d05 (1), fa99g10 (1), fb04c08, fb11d06, IMAGE:7145608 (1) (order this), zehn2357
    [cDNA] MGC:85701 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_182968 (1) 5182 bp
    Genomic GenBank:BX640469 (1) 83435 bp
    Select Tool
    Polypeptide UniProtKB:Q6IQX2 (1) 1352 aa
    Sequence Clusters UniGene:75575 (1)
    Sequence Information (all 26)
    ORTHOLOGY for col1a2 ( Chr: 19 )
    CITATIONS (95)