Gene

gypc

ID

ZDB-GENE-030131-7930

Name

glycophorin C (Gerbich blood group)

Symbol

gypc Nomenclature History

Previous Names

fj41h10
wu:fj41h10

Type

protein_coding_gene

Location

Chr: 9 Mapping Details/Browsers

Description

Localizes to extrinsic component of plasma membrane. Human ortholog(s) of this gene implicated in malaria. Is expressed in nucleate erythrocyte. Orthologous to human GYPC (glycophorin C (Gerbich blood group)).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Nunomura et al., 2007

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With gypc Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
		[Blood group, Gerbich]	616089
		{Malaria, resistance to}	611162

Associated With gypc Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003585	Neurexin/syndecan/glycophorin C
Family	IPR042192	Glycophorin-C

Domain Details Per Protein

Protein	Length	Glycophorin-C	Neurexin/syndecan/glycophorin C
UniProtKB:Q6XFR2 InterPro	89

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	gypc-201 (1) Ensembl	Havana	1451 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-gypc	polyclonal	gypc		Rabbit	IHC WB		1

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations