ZFIN ID: ZDB-GENE-030131-7928
Gene Name: ribophorin II
Gene Symbol: rpn2    Nomenclature History

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Previous Names: fb95d11, fj62b10, wu:fb61f08 (1), wu:fb74e07, wu:fb95d11, wu:fj41f11, wu:fj62b10

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 11 Mapping Details/Browsers
Description: Predicted to contribute to dolichyl-diphosphooligosaccharide-protein glycotransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to localize to oligosaccharyltransferase complex. Is expressed in female organism. Orthologous to human RPN2 (ribophorin II).
Genome Resources: Alliance (1),  Gene:335985 (1),  Ensembl(GRCz11):ENSDARG00000009724 (2)
GENE EXPRESSION
All Expression Data: 3 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56291]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:6908674]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi3583Tg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la010031Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la017695Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH rpn2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rpn2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein N-linked glycosylation (more)
    Cellular Component endoplasmic reticulum (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rpn2-201 (1)    Ensembl 1936
    rpn2-204 (1)    Ensembl 722
    rpn2-205 (1)    Ensembl 783
    rpn2-206 (1)    Ensembl 537
    rpn2-207 (1)    Ensembl 839
    ncRNA rpn2-006 (1)    Ensembl 856
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rpn2 No data available
    MARKER RELATIONSHIPS
    rpn2 Contained in: [BAC] CH73-223I23 (1)
    [Fosmid] CH1073-287G6 (1), ZFOS-1403H8 (1)
    rpn2 Encodes: [EST] fb61f08, fb74e07, fb95d11, fj41f11, fj62b10, IMAGE:6908674 (1)
    [cDNA] MGC:56291 (1), MGC:76873 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_212748 (1) 2381 nt
    Genomic GenBank:CU929092 (1) 88958 nt
    Select Tool
    Polypeptide UniProtKB:A0A2R8Q108 (1) 643 aa
    Sequence Information (all 36)
    ORTHOLOGY for rpn2 ( Chr: 11 )
    CITATIONS (32)