ZFIN Gene: rpn2

ZFIN ID: ZDB-GENE-030131-7928

ZFIN ID: ZDB-GENE-030131-7928

Gene Name:

ribophorin II

Gene Symbol:

rpn2 Nomenclature History

Previous Names:

fb95d11, fj62b10, wu:fb61f08 (1), wu:fb74e07, wu:fb95d11, wu:fj41f11, wu:fj62b10

Gene Type:

protein_coding_gene

Location:

Chr: 11 Mapping Details/Browsers

Description:

Predicted to contribute to dolichyl-diphosphooligosaccharide-protein glycotransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to localize to oligosaccharyltransferase complex. Is expressed in female organism. Orthologous to human RPN2 (ribophorin II).

Genome Resources:

Alliance (1), Gene:335985 (1), Ensembl(GRCz11):ENSDARG00000009724 (2)

GENE EXPRESSION
All Expression Data:	3 figures from 2 publications
Directly Submitted Expression Data:	1 figure (1 image) from Thisse et al., 2004 [MGC:56291]
	1 figure (1 image) from Thisse et al., 2004 [IMAGE:6908674]
Wild-type Stages, Structures:	Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
	female organism brain unspecified
High Throughput Expression:	GEO (1) , Expression Atlas (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
hi3583Tg	Transgenic Insertion	Intron 1	Unknown	DNA	Zebrafish International Resource Center (ZIRC) (order this)
la010031Tg	Transgenic Insertion	Unknown	Unknown	DNA	Zebrafish International Resource Center (ZIRC) (order this)
la017695Tg	Transgenic Insertion	Unknown	Unknown	DNA	Zebrafish International Resource Center (ZIRC) (order this)

PHENOTYPE

Data:	2 figures from 2 publications
Observed in:	eye head mandibular arch skeleton pericardium pharyngeal arch 3-7 skeleton

DISEASE ASSOCIATED WITH rpn2 HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH rpn2 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	protein N-linked glycosylation (more)
Cellular Component	endoplasmic reticulum (more)

GO Terms (all 5)

PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available

TRANSCRIPTS
Type	Name	Length (nt)	Analysis
mRNA	rpn2-201 (1)	1936	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	rpn2-204 (1)	722	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	rpn2-205 (1)	783	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	rpn2-206 (1)	537	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	rpn2-207 (1)	839	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rpn2-006 (1)	856	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Browsers: UCSC, NCBI, Ensembl, ZFIN

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM rpn2 No data available

MARKER RELATIONSHIPS

rpn2 Contained in:	[BAC] CH73-223I23 (1) [Fosmid] CH1073-287G6 (1), ZFOS-1403H8 (1)
rpn2 Encodes:	[EST] fb61f08, fb74e07, fb95d11, fj41f11, fj62b10, IMAGE:6908674 (1) [cDNA] MGC:56291 (1), MGC:76873 (1)

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_212748 (1)	2381 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CU929092 (1)	88958 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A0A2R8Q108 (1)	643 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Sequence Information (all 36)

ORTHOLOGY for rpn2 ( Chr: 11 )

CITATIONS (32)

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