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ZIRC
ZFIN ID: ZDB-GENE-030131-7928
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Gene Name: ribophorin II
Gene Symbol: rpn2    Nomenclature History

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Previous Names: fb95d11, fj62b10, wu:fb61f08 (1), wu:fb74e07, wu:fb95d11, wu:fj41f11, wu:fj62b10

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 11 Mapping Details/Browsers
Description: Predicted to contribute to dolichyl-diphosphooligosaccharide-protein glycotransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to localize to the oligosaccharyltransferase complex. Orthologous to human RPN2 (ribophorin II).
Genome Resources: Alliance (1),  Gene:335985 (1),  Ensembl(GRCz11):ENSDARG00000009724 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56291]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:6908674]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi3583Tg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la010031Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la017695Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH rpn2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rpn2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein N-linked glycosylation (more)
    Cellular Component endoplasmic reticulum (more)
    Molecular Function CONTRIBUTES_TO   dolichyl-diphosphooligosaccharide-protein glycotransferase activity (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR008814 (1)
  • Pfam:PF05817 (1)
    • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rpn2-201 (1)    Ensembl 1936
    Select Tool
    rpn2-204 (1)    Ensembl 722
    Select Tool
    rpn2-205 (1)    Ensembl 783
    Select Tool
    rpn2-206 (1)    Ensembl 537
    Select Tool
    rpn2-207 (1)    Ensembl 839
    Select Tool
    ncRNA rpn2-006 (1)    Ensembl 856
    Select Tool
    Browsers: UCSC,  NCBI,  Ensembl,  ZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rpn2 No data available
    MARKER RELATIONSHIPS
    rpn2 Contained in: [BAC] CH73-223I23 (1) (order this)
    [Fosmid] CH1073-287G6 (1) (order this), ZFOS-1403H8 (1)
    rpn2 Encodes: [EST] fb61f08, fb74e07, fb95d11, fj41f11, fj62b10, IMAGE:6908674 (1) (order this)
    [cDNA] MGC:56291 (1) (order this), MGC:76873 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_212748 (1) 2381 bp
    Select Tool
    Genomic GenBank:CU929092 (1) 88958 bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8Q108 (1) 643 aa
    Select Tool
    Sequence Clusters UniGene:121129 (1)
    Sequence Information (all 37)
    ORTHOLOGY for rpn2 ( Chr: 11 )
    CITATIONS (30)