Gene

rpn2

ID

ZDB-GENE-030131-7928

Name

ribophorin II

Symbol

rpn2 Nomenclature History

Previous Names

fb95d11
fj62b10
wu:fb61f08 (1)
wu:fb74e07
wu:fb95d11
wu:fj41f11
wu:fj62b10

Type

protein_coding_gene

Location

Chr: 11 Mapping Details/Browsers

Description

Predicted to be involved in protein N-linked glycosylation. Predicted to localize to oligosaccharyltransferase complex. Is expressed in female organism. Orthologous to human RPN2 (ribophorin II).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:56291 (1 image)
IMAGE:6908674 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 2 figures from 2 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rpn2 Human Ortholog

No data available

Associated With rpn2 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR008814	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1

Domain Details Per Protein

Protein	Length	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1
UniProtKB:Q7ZV07 InterPro	630

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rpn2-201 (1) Ensembl	Havana	1936 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rpn2-202 (1) Ensembl	Ensembl	1969 nt	Select Tool ZFIN BLAST
mRNA	rpn2-204 (1) Ensembl	Havana	722 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rpn2-205 (1) Ensembl	Havana	783 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rpn2-206 (1) Ensembl	Havana	537 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rpn2-207 (1) Ensembl	Havana	839 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rpn2-208 (1) Ensembl	Ensembl	2286 nt	Select Tool ZFIN BLAST
mRNA	rpn2-209 (1) Ensembl	Ensembl	2404 nt	Select Tool ZFIN BLAST
ncRNA	rpn2-006 (1) Ensembl	Havana	856 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations