ZFIN Gene: sod2

ZFIN ID: ZDB-GENE-030131-7742

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Gene Name:	superoxide dismutase 2, mitochondrial
Gene Symbol:	sod2
Previous Names:	cb463 (1), Mn-SOD (1), sod(Mn) (1), wu:fj33b01
Location:	Chr: 20 Details

Gene Name:

superoxide dismutase 2, mitochondrial

Gene Symbol:

sod2

Previous Names:

cb463 (1), Mn-SOD (1), sod(Mn) (1), wu:fj33b01

Location:

Chr: 20 Details

GENE EXPRESSION
All Expression Data:	16 figures from 12 publications
Directly Submitted Expression Data:	3 figures (6 images) from Thisse et al., 2001 [cb463]
Wild-type Stages, Structures:	Pharyngula:Prim-15 (30.0h-36.0h) to Adult (90d-730d, breeding adult)
	brain , gill , liver , muscle (all 11)
Curated Microarray Expression:	GEO (1)

GENE EXPRESSION

All Expression Data:

16 figures from 12 publications

Directly Submitted Expression Data:

3 figures (6 images) from Thisse et al., 2001 [cb463]

Wild-type Stages, Structures:

Pharyngula:Prim-15 (30.0h-36.0h) to Adult (90d-730d, breeding adult)

brain, gill, liver, muscle (all 11) expand

Curated Microarray Expression:

GEO (1)

Phenotype of Human Orthologue	OMIM Phenotype ID
{Microvascular complications of diabetes 6}	612634

Phenotype of Human Orthologue

OMIM Phenotype ID

{Microvascular complications of diabetes 6}

612634

GENE ONTOLOGY

Ontology	GO Term
Biological Process	response to methylmercury (more)
Molecular Function	metal ion binding (more)

GO Terms (all 7)

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR001189 (1) InterPro:IPR019831 (1) InterPro:IPR019832 (1) InterPro:IPR019833 (1)	PROSITE:PS00088 (1)	Pfam:PF00081 (1) Pfam:PF02777 (1)	EC:1.15.1.1 (1)

TRANSCRIPTS
Type	Name	Length (bp)	Analysis
mRNA	sod2-001 (1)	956	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
ncRNA	sod2-002 (1)	644	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
	sod2-003 (1)	982	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
	sod2-004 (1)	780	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega

TRANSCRIPTS

Type

Name

Length (bp)

Analysis

mRNA

sod2-001 (1)

956

Select Tool

ZFIN BLAST

NCBI BLAST

Ensembl

UCSC BLAT

Vega

ncRNA

sod2-002 (1)

644

Select Tool

ZFIN BLAST

NCBI BLAST

Ensembl

UCSC BLAT

Vega

sod2-003 (1)

982

Select Tool

ZFIN BLAST

NCBI BLAST

Ensembl

UCSC BLAT

Vega

sod2-004 (1)

780

Select Tool

ZFIN BLAST

NCBI BLAST

Ensembl

UCSC BLAT

Vega

SEGMENT (CLONE AND PROBE) RELATIONSHIPS

sod2 Contained in:	[BAC] CH211-195E3 (1) (order this)
sod2 Encodes:	[EST] cb463 (1), fj33b01 [cDNA] MGC:73051 (1) (order this)

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_199976 (1)	979 bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
Genomic	GenBank:AL929182 (1)	225515 bp	Blast at MegaBLAST
Polypeptide	UniProtKB:Q2TV65 (1)	224 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast Vega Protein Blast
Sequence Clusters	UniGene:6314 (1)

Type

Accession #

Length (bp/aa)

Analysis

RNA

RefSeq:NM_199976 (1)

979 bp

Select Tool

ZFIN BLAST

NCBI BLAST

Ensembl

UCSC BLAT

Vega

Genomic

GenBank:AL929182 (1)

225515 bp

Blast at MegaBLAST

Polypeptide

UniProtKB:Q2TV65 (1)

224 aa

Select Tool

ZFIN BLAST

SIB BLAST

Ensembl Protein Blast

Vega Protein Blast

Sequence Clusters

UniGene:6314 (1)

ORTHOLOGY

				Evidence
Species	Symbol	Chr (Position)	Accession #	AA	CL
Zebrafish	sod2	20
Human	SOD2	6 (6q25.3)	OMIM:147460 Gene:6648
Orthology Details