ZFIN ID: ZDB-GENE-030131-6607
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Gene Name: ring finger protein 40
Gene Symbol: rnf40
Sequence Ontology ID : SO:0000704

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Previous Names: si:rp71-1c10.1, wu:fk48a06 (1), zgc:103763 (1), zgc:152796

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(Including Attributions)
Location: Chr: 12 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:103763]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  whole organism
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la010000Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la027340Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa35311 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
    • Targeting reagents: MO1-rnf40 (1)
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rnf40 HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process histone monoubiquitination (more)
    Cellular Component integral component of membrane (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001841 (1)
  • InterPro:IPR013083 (1)
  • InterPro:IPR013956 (1)
  • InterPro:IPR017907 (1)
    		•
  • PROSITE:PS00518 (1)
  • PROSITE:PS50089 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA rnf40-001 (1) 3803
    Select Tool
    ncRNA rnf40-002 (1) 1406
    Select Tool
    rnf40-003 (1) 3045
    Select Tool
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rnf40 No data available
    MARKER RELATIONSHIPS
    rnf40Contained in: [BAC] CH73-81K8 (1) (order this), RP71-1C10 (order this)
    rnf40Encodes: [EST] fk48a06
    [cDNA] MGC:103763 (1) (order this), MGC:152796 (1) (order this), MGC:192853 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001005778 (1) 2127bp
    Select Tool
    Genomic GenBank:AL732488 (1) 165151bp
    Select Tool
    Polypeptide UniProtKB:F1QXU6 (1) 1010aa
    Select Tool
    Sequence Clusters UniGene:81877 (1)
    Sequence Information (all 29)
    OTHER rnf40 GENE PAGES
  • Alliance (1)
  • Gene:798088 (1)
  • VEGA:OTTDARG00000002117 (1)
  • Ensembl(GRCz10):ENSDARG00000054201 (1)
    • ORTHOLOGY for rnf40 (Chr: 12)
    CITATIONS (22)