ZFIN ID: ZDB-GENE-030131-6607
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Gene Name: ring finger protein 40
Gene Symbol: rnf40    Nomenclature History

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Previous Names: si:rp71-1c10.1, wu:fk48a06 (1), zgc:103763 (1), zgc:152796

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 12 Mapping Details/Browsers
Description: Predicted to have metal ion binding activity and ubiquitin-protein transferase activity. Predicted to be involved in histone monoubiquitination. Predicted to localize to the nucleus. Orthologous to human RNF40 (ring finger protein 40).
Genome Resources: Alliance (1),  Gene:798088 (1),  Ensembl(GRCz11):ENSDARG00000054201 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:103763]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la010000Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la027340Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa35311 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-rnf40 N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rnf40 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rnf40 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chromatin organization (more)
    Cellular Component nucleus (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR001841 Zinc finger, RING-type
    Homologous_superfamily IPR013083 Zinc finger, RING/FYVE/PHD-type
    Family IPR013956 E3 ubiquitin ligase Bre1
    Conserved_site IPR017907 Zinc finger, RING-type, conserved site
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rnf40-203 (1)    Ensembl 3803
    Select Tool
    Browsers: UCSC,  NCBI,  Ensembl,  ZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rnf40 No data available
    MARKER RELATIONSHIPS
    rnf40 Contained in: [BAC] CH73-81K8 (1), RP71-1C10
    rnf40 Encodes: [EST] fk48a06
    [cDNA] MGC:103763 (1), MGC:152796 (1), MGC:192853 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001005778 (1) 2127 bp
    Select Tool
    Genomic GenBank:AL732488 (1) 165151 bp
    Select Tool
    Polypeptide UniProtKB:F1QXU6 (1) 1010 aa
    Select Tool
    Sequence Information (all 26)
    ORTHOLOGY for rnf40 ( Chr: 12 )
    CITATIONS (26)