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ZIRC
ZFIN ID: ZDB-GENE-030131-6607
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Gene Name: ring finger protein 40
Gene Symbol: rnf40
Sequence Ontology ID : SO:0000704

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Previous Names: si:rp71-1c10.1, wu:fk48a06 (1), zgc:103763 (1), zgc:152796

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(Including Attributions)
Location: Chr: 12 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have metal ion binding activity and ubiquitin-protein transferase activity. Predicted to be involved in histone monoubiquitination. Predicted to localize to the nucleus. Orthologous to  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:103763]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la010000Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la027340Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa35311 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rnf40 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rnf40 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chromatin organization (more)
    Cellular Component nucleus (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001841 (1)
  • InterPro:IPR013083 (1)
  • InterPro:IPR013956 (1)
  • InterPro:IPR017907 (1)
    		•
  • PROSITE:PS00518 (1)
  • PROSITE:PS50089 (1)
    		•
  • EC:2.3.2.27 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA rnf40-002 (1) 1406
    Select Tool
    rnf40-003 (1) 3045
    Select Tool
    mRNA rnf40-203 (1) 3803
    Select Tool
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rnf40 No data available
    MARKER RELATIONSHIPS
    rnf40Contained in: [BAC] CH73-81K8 (1) (order this), RP71-1C10 (order this)
    rnf40Encodes: [EST] fk48a06
    [cDNA] MGC:103763 (1) (order this), MGC:152796 (1) (order this), MGC:192853 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001005778 (1) 2127bp
    Select Tool
    Genomic GenBank:AL732488 (1) 165151bp
    Select Tool
    Polypeptide UniProtKB:F1QXU6 (1) 1010aa
    Select Tool
    Sequence Clusters UniGene:81877 (1)
    Sequence Information (all 27)
    OTHER rnf40 GENE PAGES
  • Alliance (1)
  • Gene:798088 (1)
  • VEGA:OTTDARG00000002117 (1)
  • Ensembl(GRCz11):ENSDARG00000054201 (1)
    • ORTHOLOGY for rnf40 (Chr: 12)
    CITATIONS (24)