ZFIN Gene: rnf40

ZFIN ID: ZDB-GENE-030131-6607

ZFIN ID: ZDB-GENE-030131-6607

Gene Name:

ring finger protein 40

Gene Symbol:

rnf40 Nomenclature History

Previous Names:

si:rp71-1c10.1, wu:fk48a06 (1), zgc:103763 (1), zgc:152796

Gene Type:

protein_coding_gene

Location:

Chr: 12 Mapping Details/Browsers

Description:

Predicted to have metal ion binding activity and ubiquitin-protein transferase activity. Predicted to be involved in histone monoubiquitination. Predicted to localize to nucleus. Orthologous to human RNF40 (ring finger protein 40).

Genome Resources:

Alliance (1), Gene:798088 (1), Ensembl(GRCz11):ENSDARG00000054201 (1)

GENE EXPRESSION
Directly Submitted Expression Data:	1 figure (1 image) from Thisse et al., 2004 [MGC:103763]
Wild-type Stages, Structures:	Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
	whole organism
High Throughput Expression:	GEO (1) , Expression Atlas (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
la010000Tg	Transgenic Insertion	Unknown	Unknown	DNA	Zebrafish International Resource Center (ZIRC) (order this)
la027340Tg	Transgenic Insertion	Unknown	Unknown	DNA	Zebrafish International Resource Center (ZIRC) (order this)
sa35311	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)

Sequence Targeting Reagents

Targeting Reagent	Created Alleles	Publications
MO1-rnf40	N/A	1

PHENOTYPE No data available

DISEASE ASSOCIATED WITH rnf40 HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH rnf40 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	chromatin organization (more)
Cellular Component	nucleus (more)
Molecular Function	metal ion binding (more)

GO Terms (all 6)

PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available

TRANSCRIPTS
Type	Name	Length (nt)	Analysis
mRNA	rnf40-203 (1)	3803	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Browsers: UCSC, NCBI, Ensembl, ZFIN

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM rnf40 No data available

MARKER RELATIONSHIPS

rnf40 Contained in:	[BAC] CH73-81K8 (1), RP71-1C10
rnf40 Encodes:	[EST] fk48a06 [cDNA] MGC:103763 (1), MGC:152796 (1), MGC:192853 (1)

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001005778 (1)	2127 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:AL732488 (1)	165151 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:F1QXU6 (1)	1010 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Sequence Information (all 26)

ORTHOLOGY for rnf40 ( Chr: 12 )

CITATIONS (26)

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