ZFIN ID: ZDB-GENE-030131-6333
Gene Name: BUD13 homolog
Gene Symbol: bud13    Nomenclature History

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Previous Names: fi47e11, si:dkeyp-69c1.6, wu:fi47e11 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 21 Mapping Details/Browsers
Description: Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to the RES complex and U2-type spliceosomal complex. Is expressed in blastodisc and central nervous system. Orthologous to human BUD13 (BUD13 homolog).
Genome Resources: Alliance (1),  Gene:564510 (1),  Ensembl(GRCz11):ENSDARG00000006666 (1)
GENE EXPRESSION
All Expression Data: Fig. 1 from Fernandez et al., 2018
Wild-type Stages, Structures: Blastula:High (3.33h-3.66h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa1513 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23927 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • ya103 Small Deletion Unknown Unknown CRISPR
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-bud13 1
    MO1-bud13 N/A 1
    DISEASE ASSOCIATED WITH bud13 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH bud13 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA splicing, via spliceosome (more)
    Cellular Component RES complex (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Family IPR018609 Bud13
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA si:dkeyp-69c1.6-201 (1)    Ensembl 1782
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM bud13 No data available
    MARKER RELATIONSHIPS
    bud13 Contained in: [BAC] DKEYP-69C1 (1)
    bud13 Encodes: [EST] fi47e11
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_021473426 (1)
    Genomic GenBank:BX510940 (1) 172605 bp
    Select Tool
    Polypeptide UniProtKB:Q1JQ54 (1) 521 aa
    Sequence Information (all 21)
    ORTHOLOGY for bud13 ( Chr: 21 )
    CITATIONS (15)