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ZIRC
ZFIN ID: ZDB-GENE-030131-6279
Gene Name: lysine (K)-specific demethylase 4A, genome duplicate b
Gene Symbol: kdm4ab    Nomenclature History

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Previous Names: jmjd2A (1), jmjd2al, si:ch211-262l3.1, wu:fi42b08

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 2 Mapping Details/Browsers
Description: Predicted to have histone demethylase activity (H3-K36 specific) and histone demethylase activity (H3-K9 specific). Involved in blood vessel morphogenesis. Predicted to localize to the histone methyltransferase complex. Orthologous to human KDM4A (lysine demethylase 4A).
Genome Resources: Alliance (1),  Gene:334347 (1),  Ensembl(GRCz11):ENSDARG00000019103 (2)
GENE EXPRESSION
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa11870 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32882 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45095 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45096 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-kdm4ab N/A 1
    MO2-kdm4ab N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH kdm4ab HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH kdm4ab VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process blood vessel morphogenesis (more)
    Cellular Component nucleus (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 8)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA kdm4ab-201 (1)    Ensembl 4339
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM kdm4ab No data available
    MARKER RELATIONSHIPS
    kdm4ab Contained in: [BAC] CH211-262L3 (1) (order this), DKEY-257K3 (1) (order this)
    kdm4ab Encodes: [EST] fi42b08
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_001339628 (1) 4333 bp
    Genomic GenBank:BX119989 (1) 228548 bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1QNG0 (1) 1045 aa
    Sequence Clusters UniGene:24248 (1)
    Sequence Information (all 18)
    ORTHOLOGY for kdm4ab ( Chr: 2 )
    CITATIONS (23)