ZFIN ID: ZDB-GENE-030131-5923
Gene Name: RNA binding motif protein 38
Gene Symbol: rbm38    Nomenclature History

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Previous Names: fi25e12, rnpc1 (1), wu:fi25e12, zgc:92336

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 23 Mapping Details/Browsers
Description: Predicted to have mRNA binding activity. Predicted to be involved in mRNA processing and regulation of RNA metabolic process. Predicted to localize to cytosol; nucleus; and ribonucleoprotein complex. Orthologous to human RBM38 (RNA binding motif protein 38).
Genome Resources: Alliance (1),  Gene:333991 (1),  Ensembl(GRCz11):ENSDARG00000058818 (2)
GENE EXPRESSION
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa24252 Point Mutation Unknown Missense, Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-rbm38
    2
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rbm38 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rbm38 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component cytosol (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rbm38-201 (1)    Ensembl 2393
    rbm38-202 (1)    Ensembl 877
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rbm38 No data available
    MARKER RELATIONSHIPS
    rbm38 Contained in: [BAC] CH211-147F12 (1)
    rbm38 Encodes: [EST] fi25e12
    [cDNA] MGC:92336, MGC:173993 (1), MGC:198264 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001110127 (1) 2379 nt
    Genomic GenBank:AL935305 (1) 190222 nt
    Select Tool
    Polypeptide UniProtKB:Q7T2V9 (1) 246 aa
    Sequence Information (all 26)
    ORTHOLOGY for rbm38 ( Chr: 23 )
    CITATIONS (27)