ZFIN ID: ZDB-GENE-030131-5794
Gene Name: small nuclear RNA activating complex, polypeptide 4
Gene Symbol: snapc4
Sequence Ontology ID : SO:0000704

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Previous Names: fi18h02, si:dkey-1o2.4 (1), si:dkey-1o2.5 (1), wu:fi18h02 (1)

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA binding activity; involved in cell proliferation, intrahepatic bile duct development, and pancreas development; predicted to localize to the snRNA-activating protein complex;  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Cleavage:4-cell (1.0h-1.25h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la025147Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • m1045 Point Mutation Exon 10 Premature Stop ENU
    s445 Point Mutation Unknown Premature Stop ENU
    sa26575 Point Mutation Unknown Unknown ENU
    sa38504 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 9 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH snapc4 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH snapc4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process intrahepatic bile duct development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001005 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR015495 (1)
  • InterPro:IPR017877 (1)
  • InterPro:IPR017930 (1)
  • InterPro:IPR031282 (1)
  • PROSITE:PS50090 (1)
  • PROSITE:PS51294 (1)
  • Pfam:PF00249 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA snapc4-001 (1) 1880
    snapc4-002 (1) 631
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM snapc4 No data available
    MARKER RELATIONSHIPS
    snapc4Contained in: [BAC] CH73-214K13 (1) (order this), DKEY-1O2 (1) (order this)
    snapc4Encodes: [EST] fi18h02
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001258410 (1)
    Genomic GenBank:CR381619 (1) 266753bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1QVS5 (1) 1561aa
    Sequence Clusters UniGene:80445 (1)
    Sequence Information (all 22)
    OTHER snapc4 GENE PAGES
  • Alliance (1)
  • Gene:561241 (1)
  • VEGA:OTTDARG00000018726 (1)
  • Ensembl(GRCz11):ENSDARG00000067673 (2)
  • ORTHOLOGY for snapc4 (Chr: 5)
    CITATIONS (25)