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ZIRC
ZFIN ID: ZDB-GENE-030131-5736
Gene Name: craniofacial development protein 1
Gene Symbol: cfdp1    Nomenclature History

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Previous Names: fi15f05, rltpr, si:dkey-6e12.6, wu:fi15f05, zgc:136405

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 18 Mapping Details/Browsers
Description: Involved in bone mineralization and cranial skeletal system development. Predicted to localize to the condensed chromosome kinetochore. Is expressed in brain; fin bud; head; otic vesicle; and yolk syncytial layer. Orthologous to human CFDP1 (craniofacial development protein 1).
Genome Resources: Alliance (1),  Gene:567870 (1),  Ensembl(GRCz11):ENSDARG00000095086 (1)
Note: The genomic locus known as cfdp1 was originally misassigned as rltpr.
GENE EXPRESSION
All Expression Data: 5 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7150861]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 6 (144.0h-168.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa13566 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa29037 Point Mutation Unknown Splice Site ENU
    sa32208 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-cfdp1 N/A 1
    DISEASE ASSOCIATED WITH cfdp1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cfdp1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process bone mineralization (more)
    Cellular Component chromosome (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR011421 (1)
  • PROSITE:PS51279 (1)
  • Pfam:PF07572 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA cfdp1-201 (1)    Ensembl 1741
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Name Type Isotype Host Organism Assay Source Publications
    Ab1-cfdp1 polyclonal IgG Rabbit IHC, WB Abcam plc
    2
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cfdp1 No data available
    MARKER RELATIONSHIPS
    cfdp1 Contained in: [BAC] DKEY-6E12 (1) (order this)
    cfdp1 Encodes: [EST] fi15f05, IMAGE:7150861 (1) (order this)
    [cDNA] MGC:136405 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001100035 (1) 1741 bp
    Genomic GenBank:BX088593 (1) 251217 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q5BKW0 (1) 354 aa
    Sequence Clusters UniGene:141547 (1)
    Sequence Information (all 24)
    ORTHOLOGY for cfdp1 ( Chr: 18 )
    CITATIONS (18)