ZFIN Gene: pcbp2

ZFIN ID: ZDB-GENE-030131-563

ZFIN ID: ZDB-GENE-030131-563

Gene Name:

poly(rC) binding protein 2

Gene Symbol:

pcbp2 Nomenclature History

Previous Names:

fb36h02, wu:fb36h02, zgc:55964 (1)

Gene Type:

protein_coding_gene

Location:

Chr: 9 Mapping Details/Browsers

Description:

Predicted to have mRNA binding activity and single-stranded DNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to localize to cytoplasm and nucleoplasm. Orthologous to several human genes including PCBP2 (poly(rC) binding protein 2).

Genome Resources:

Alliance (1), Gene:321844 (1), Ensembl(GRCz11):ENSDARG00000099039 (1)

GENE EXPRESSION
All Expression Data:	3 figures from 3 publications
Directly Submitted Expression Data:	1 figure (1 image) from Thisse et al., 2004 [MGC:55964]
Wild-type Stages, Structures:	Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
	unspecified whole organism
High Throughput Expression:	GEO (1) , Expression Atlas (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
la026799Tg	Transgenic Insertion	Unknown	Unknown	DNA	Zebrafish International Resource Center (ZIRC) (order this)
sa15679	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa38716	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa41325	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)

PHENOTYPE No data available

DISEASE ASSOCIATED WITH pcbp2 HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH pcbp2 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	regulation of gene expression (more)
Cellular Component	cytoplasm (more)
Molecular Function	nucleic acid binding (more)

GO Terms (all 9)

PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available

TRANSCRIPTS
Type	Name	Length (nt)	Analysis
mRNA	pcbp2-201 (1)	2219	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	pcbp2-202 (1)	716	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Browsers: UCSC, NCBI, Ensembl, ZFIN

INTERACTIONS AND PATHWAYS

ANTIBODIES

Name	Type	Isotype	Host Organism	Assay	Source	Publications
Ab1-pcbp2	polyclonal	IgG	Rabbit	WB	ABclonal	1

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM pcbp2 No data available

MARKER RELATIONSHIPS

pcbp2 Contained in:	[BAC] CH211-166E11 (1)
pcbp2 Encodes:	[EST] fb36h02 [cDNA] MGC:55964 (1), MGC:77206 (1)

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_201192 (1)	2176 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CR848672 (1)	57909 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:Q7ZVK5 (1)	318 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Sequence Information (all 19)

ORTHOLOGY for pcbp2 ( Chr: 9 )

CITATIONS (29)

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