ZFIN ID: ZDB-GENE-030131-5277
Gene Name: cleavage and polyadenylation specific factor 6
Gene Symbol: cpsf6
Sequence Ontology ID : SO:0000704

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Previous Names: wu:fa22f12, zgc:85819 (1)

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(Including Attributions)
Location: Chr: 4 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:85819]
  12 figures (21 images) from Rauch et al., 2003 [fb16e01]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa9322 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH cpsf6 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cpsf6 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process messenger ribonucleoprotein complex assembly (more)
    Cellular Component cytoplasm (more)
    Molecular Function mRNA binding (more)
    GO Terms (all 15)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000504 (1)
  • InterPro:IPR012677 (1)
  • InterPro:IPR034769 (1)
  • InterPro:IPR034772 (1)
  • InterPro:IPR035979 (1)
  • PROSITE:PS50102 (1)
  • Pfam:PF00076 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cpsf6-001 (1) 2160
    cpsf6-002 (1) 813
    cpsf6-003 (1) 2205
    ncRNA cpsf6-004 (1) 797
    mRNA cpsf6-005 (1) 900
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM cpsf6 No data available
    MARKER RELATIONSHIPS
    cpsf6Contained in: [BAC] DKEY-97M3 (1) (order this)
    cpsf6Encodes: [EST] fa22f12, fb16e01 (1) (order this)
    [cDNA] MGC:85819 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001017993 (1) 2162bp
    Genomic GenBank:CR749743 (1) 177044bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8RIN6 (1) 571aa
    Sequence Clusters UniGene:75857 (1)
    Sequence Information (all 24)
    OTHER cpsf6 GENE PAGES
  • Alliance (1)
  • Gene:327069 (1)
  • VEGA:OTTDARG00000014511 (1)
  • Ensembl(GRCz11):ENSDARG00000018618 (2)
  • ORTHOLOGY for cpsf6 (Chr: 4)
    CITATIONS (25)