ZFIN ID: ZDB-GENE-030131-5227
Gene Name: PDZ and LIM domain 1 (elfin)
Gene Symbol: pdlim1
Sequence Ontology ID : SO:0000704

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Previous Names: clim1 (1), elfin (1), wu:fa19a03, wu:fy34f10, zgc:110681

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 6 figures (15 images) from Thisse et al., 2004 [IMAGE:7158364]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Larval:Day 4 (96.0h-120.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la011252Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pdlim1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pdlim1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component cytoskeleton (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001478 (1)
  • InterPro:IPR001781 (1)
  • InterPro:IPR006643 (1)
  • InterPro:IPR028537 (1)
  • InterPro:IPR031847 (1)
  • InterPro:IPR036034 (1)
  • PROSITE:PS00478 (1)
  • PROSITE:PS50023 (1)
  • PROSITE:PS50106 (1)
  • Pfam:PF00412 (1)
  • Pfam:PF00595 (1)
  • Pfam:PF15936 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA pdlim1-001 (1) 1724
    ncRNA pdlim1-002 (1) 883
    mRNA pdlim1-003 (1) 378
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pdlim1 No data available
    MARKER RELATIONSHIPS
    pdlim1Contained in: [BAC] CH211-213F9 (1) (order this)
    pdlim1Encodes: [EST] fa19a03, fy34f10, IMAGE:7158364 (1) (order this)
    [cDNA] MGC:110681 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001017870 (1) 1538bp
    Genomic GenBank:BX663512 (1) 95646bp
    Select Tool
    Polypeptide UniProtKB:B8A5V6 (1) 322aa
    Sequence Clusters UniGene:43266 (1)
    Sequence Information (all 15)
    OTHER pdlim1 GENE PAGES
  • Alliance (1)
  • Gene:550568 (1)
  • VEGA:OTTDARG00000022864 (1)
  • Ensembl(GRCz11):ENSDARG00000019845 (2)
  • ORTHOLOGY for pdlim1 (Chr: 13)
    CITATIONS (24)