ZFIN ID: ZDB-GENE-030131-5217
Gene Name: antifreeze protein type IV
Gene Symbol: afp4
Sequence Ontology ID : SO:0000704

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Previous Names: afp4a (1), afp4b (1), fa18f02, fb64g03, wu:fa18f02, wu:fb64g03, zgc:161979

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(Including Attributions)
Location: Chr: 16 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Involved in dorsal convergence and epiboly; orthologous to human APOA2 (apolipoprotein A2).
GENE EXPRESSION
All Expression Data: Fig. 2 from Xiao et al., 2014
Wild-type Stages, Structures: Blastula:30%-epiboly (4.66h-5.25h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE
Data: 3 figures from Xiao et al., 2014
Observed in:
DISEASE ASSOCIATED WITH afp4 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH afp4 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process dorsal convergence (more)
Cellular Component blood microparticle (more)
Molecular Function cholesterol binding (more)
GO Terms (all 26)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (bp) Analysis
mRNA afp4-201 (1) 858
afp4-202 (1) 603
GENE PRODUCT DESCRIPTION No description available
INTERACTIONS AND PATHWAYS
ANTIBODIESNo data available
PLASMIDSNo data available
CONSTRUCTS WITH SEQUENCES FROM afp4 No data available
MARKER RELATIONSHIPS
afp4Contained in: [BAC] DKEY-45N22 (1) (order this)
afp4Encodes: [EST] fa18f02
[cDNA] MGC:161979 (1) (order this)
afp4Has Artifact: [EST] fb64g03 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001045488 (1) 569bp
Genomic GenBank:CR933818 (1) 243546bp Blast at MegaBLAST
Polypeptide UniProtKB:A0A0B5JSD9 (1) 130aa
Sequence Clusters UniGene:75873 (1)
Sequence Information (all 19)
OTHER afp4 GENE PAGES
  • Alliance (1)
  • Gene:568707 (1)
  • VEGA:OTTDARG00000027964 (1)
  • VEGA:OTTDARG00000035766 (1)
  • ORTHOLOGY for afp4 (Chr: 16)
    CITATIONS (12)