ZFIN ID: ZDB-GENE-030131-4444
Gene Name: collagen, type XXVIII, alpha 2a
Gene Symbol: col28a2a    Nomenclature History

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Previous Names: si:dkey-211m23.2, wu:fd06c09 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 9 Mapping Details/Browsers
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to localize to the extracellular matrix and extracellular space. Is expressed in floor plate; integument; muscle; rhombomere 5; and white matter. Orthologous to human COL28A1 (collagen type XXVIII alpha 1 chain).
Genome Resources: Alliance (1),  Gene:100294690 (1),  Ensembl(GRCz11):ENSDARG00000076321 (2)
GENE EXPRESSION
All Expression Data: 6 figures from 2 publications
Wild-type Stages, Structures: Gastrula:75%-epiboly (8.0h-9.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa9059 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17519 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa25439 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH col28a2a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH col28a2a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process extracellular matrix organization (more)
    Cellular Component collagen trimer (more)
    Molecular Function serine-type endopeptidase inhibitor activity (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR002035 von Willebrand factor, type A
    Domain IPR002223 Pancreatic trypsin inhibitor Kunitz domain
    Repeat IPR008160 Collagen triple helix repeat
    Conserved_site IPR020901 Proteinase inhibitor I2, Kunitz, conserved site
    Homologous_superfamily IPR036465 von Willebrand factor A-like domain superfamily
    Homologous_superfamily IPR036880 Pancreatic trypsin inhibitor Kunitz domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    aberrant processed transcript col28a2a-202 (1)    Ensembl 590
    mRNA col28a2a-203 (1)    Ensembl 4883
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Name Type Isotype Host Organism Assay Source Publications
    Ab1-col28a2a Rabbit IHC, WB 1
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM col28a2a No data available
    MARKER RELATIONSHIPS
    col28a2a Contained in: [BAC] DKEY-211M23 (1) (order this)
    col28a2a Encodes: [EST] fd06c09
    col28a2a Has Artifact: [EST] fc73a04
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001159842 (1)
    Genomic GenBank:CU182074 (1) 160386 bp
    Select Tool
    Polypeptide UniProtKB:C3KEZ4 (1) 1208 aa
    Sequence Information (all 16)
    ORTHOLOGY for col28a2a ( Chr: 9 )
    CITATIONS (20)