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ZIRC
ZFIN ID: ZDB-GENE-030131-4153
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Gene Name: ubiquitin specific peptidase 16
Gene Symbol: usp16
Sequence Ontology ID : SO:0001217

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Previous Names: wu:fc76b02, wu:fc76b08

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(Including Attributions)
Location: Chr: 15 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have several functions, including cysteine-type peptidase activity; transcription coactivator activity; and zinc ion binding activity. Predicted to be involved in several processes,  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7160401]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la027649Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa2796 Point Mutation Unknown Premature Stop ENU
    sa16288 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa17060 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa42615 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH usp16 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH usp16 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cellular response to DNA damage stimulus (more)
    Cellular Component nucleus (more)
    Molecular Function cysteine-type endopeptidase activity (more)
    GO Terms (all 16)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001607 (1)
  • InterPro:IPR013083 (1)
  • PROSITE:PS50271 (1)
  • Pfam:PF02148 (1)
    • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA usp16-201 (1) 3660
    Select Tool
    usp16-202 (1) 746
    Select Tool
    usp16-203 (1) 488
    Select Tool
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM usp16 No data available
    MARKER RELATIONSHIPS
    usp16 Contained in: [BAC] DKEY-121N8 (1) (order this)
    usp16 Encodes: [EST] fc76b02, fc76b08 (1), IMAGE:7160401 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001146097 (1) 3660 bp
    Select Tool
    Genomic GenBank:CR854897 (1) 185286 bp
    Select Tool
    Polypeptide UniProtKB:R4GEJ0 (1) 1438 aa
    Select Tool
    Sequence Clusters UniGene:24329 (1)
    Sequence Information (all 29)
    OTHER usp16 GENE PAGES
  • Alliance (1)
  • Gene:569700 (1)
  • VEGA:OTTDARG00000020827 (1)
    • ORTHOLOGY for usp16 ( Chr: 15 )
    CITATIONS (22)