ZFIN ID: ZDB-GENE-030131-4086
Gene Name: calcineurin-like EF-hand protein 1
Gene Symbol: chp1    Nomenclature History

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Previous Names: CHP (1), chp, si:dkey-41n20.1, wu:fc69b04, zgc:63904 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 13 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Is expressed in pronephric duct and pronephros. Human ortholog(s) of this gene implicated in spastic ataxia. Orthologous to human CHP1 (calcineurin like EF-hand protein 1).
Genome Resources: Alliance (1),  Gene:325361 (1),  Ensembl(GRCz11):ENSDARG00000052859 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 5 figures (8 images) from Thisse et al., 2004 [MGC:63904]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
CRISPR1-chp1
1
MO1-chp1 N/A 2
DISEASE ASSOCIATED WITH chp1 HUMAN ORTHOLOG
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
?Spastic ataxia 9, autosomal recessive 618438
DISEASE ASSOCIATED WITH chp1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Cellular Component cellular_component (more)
Molecular Function calcium ion binding (more)
GO Terms (all 2)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA chp1-201 (1)    Ensembl 1634
chp1-202 (1)    Ensembl 869
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM chp1 No data available
MARKER RELATIONSHIPS
chp1 Contained in: [BAC] DKEY-41N20 (1) (order this)
chp1 Encodes: [EST] fc69b04
[cDNA] MGC:63904 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_199715 (1) 1629 nt
Genomic GenBank:CR376783 (1) 205064 nt Blast at MegaBLAST
Polypeptide UniProtKB:Q7T2F7 (1) 194 aa
Sequence Information (all 14)
ORTHOLOGY for chp1 ( Chr: 13 )
CITATIONS (26)