ZFIN ID: ZDB-GENE-030131-3406
Gene Name: replication timing regulatory factor 1
Gene Symbol: rif1    Nomenclature History

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Previous Names: fc38c03, si:dkey-89p3.2, wu:fc38c03

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 9 Mapping Details/Browsers
Description: Predicted to be involved in telomere maintenance. Predicted to localize to the nucleus. Orthologous to human RIF1 (replication timing regulatory factor 1).
Genome Resources: Alliance (1),  Gene:567001 (1),  Ensembl(GRCz11):ENSDARG00000062650 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2005 [eu1103]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa6113 Point Mutation Unknown Splice Site ENU
sa7629 Point Mutation Unknown Missense ENU
sa10257 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rif1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rif1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process telomere maintenance (more)
    Cellular Component nucleus (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Homologous_superfamily IPR016024 Armadillo-type fold
    Domain IPR022031 Telomere-associated protein Rif1, N-terminal
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rif1-203 (1)    Ensembl 7574
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rif1 No data available
    MARKER RELATIONSHIPS
    rif1 Contained in: [BAC] DKEY-16P7 (1) (order this), DKEY-89P3 (1) (order this)
    rif1 Encodes: [EST] eu1103 (1), fc38c03
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001080806 (1) 7313 bp
    Genomic GenBank:CR391905 (1) 221511 bp Blast at MegaBLAST
    Polypeptide UniProtKB:A0A2R8Q220 (1) 2400 aa
    Sequence Information (all 19)
    ORTHOLOGY for rif1 ( Chr: 9 )
    CITATIONS (15)