ZFIN ID: ZDB-GENE-030131-3197
Gene Name: zinc finger, matrin-type 2
Gene Symbol: zmat2    Nomenclature History

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Previous Names: fc30d10, flj31121 (1), wu:fc30d10

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 21 Mapping Details/Browsers
Description: Predicted to have nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to U4/U6 x U5 tri-snRNP complex. Orthologous to human ZMAT2 (zinc finger matrin-type 2).
Genome Resources: Alliance (1),  Gene:324476 (1),  Ensembl(GRCz11):ENSDARG00000004956 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:113931]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi526bTg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-zmat2 N/A 1
    PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH zmat2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH zmat2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA splicing, via spliceosome (more)
    Cellular Component spliceosomal complex (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA zmat2-201 (1)    Ensembl 1196
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM zmat2 No data available
    MARKER RELATIONSHIPS
    zmat2 Contained in: [BAC] DKEY-8F23 (1) (order this)
    zmat2 Encodes: [EST] fc30d10
    [cDNA] MGC:113931 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_212681 (1) 1123 nt
    Genomic GenBank:CT027639 (1) 33553 nt
    Select Tool
    Polypeptide UniProtKB:Q4QRF9 (1) 198 aa
    Sequence Information (all 13)
    ORTHOLOGY for zmat2 ( Chr: 21 )
    CITATIONS (29)