ZFIN ID: ZDB-GENE-030131-3127
Gene Name: chondroitin sulfate synthase 1
Gene Symbol: chsy1
Sequence Ontology ID : SO:0000704

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Previous Names: chys1, wu:fc27h05, wu:fc27h06, zgc:64191

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(Including Attributions)
Location: Chr: 7 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
All Expression Data: 10 figures from 4 publications
Directly Submitted Expression Data: 6 figures (10 images) from Thisse et al., 2004 [MGC:64191]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa9893 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40837 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 7 figures from 4 publications
    Observed in:
    DISEASE ASSOCIATED WITH chsy1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    temtamy preaxial brachydactyly syndrome Temtamy preaxial brachydactyly syndrome 605282
    DISEASE ASSOCIATED WITH chsy1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cartilage morphogenesis (more)
    Cellular Component Golgi apparatus (more)
    Molecular Function acetylgalactosaminyltransferase activity (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR008428 (1)
  • InterPro:IPR029044 (1)
  • Pfam:PF05679 (1)
  • EC:2.4.1.- (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA chsy1-001 (1) 3921
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM chsy1 No data available
    MARKER RELATIONSHIPS
    chsy1Contained in: [BAC] CH73-44P7 (1) (order this), DKEY-180K7 (1) (order this)
    chsy1Encodes: [EST] fc27h05, fc27h06 (1)
    [cDNA] MGC:64191 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_212678 (1) 3982bp
    Genomic GenBank:CU457792 (1) 172744bp
    Select Tool
    Polypeptide UniProtKB:Q6P296 (1) 801aa
    Sequence Clusters UniGene:78655 (1)
    Sequence Information (all 16)
    OTHER chsy1 GENE PAGES
  • Alliance (1)
  • Gene:324407 (1)
  • VEGA:OTTDARG00000035559 (1)
  • Ensembl(GRCz11):ENSDARG00000079027 (2)
  • ORTHOLOGY for chsy1 (Chr: 7)
    CITATIONS (28)