ZFIN ID: ZDB-GENE-030131-304
Gene Name: proteasome 26S subunit, ATPase 6
Gene Symbol: psmc6
Sequence Ontology ID : SO:0000704

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Previous Names: fb20g04, wu:fb20g04, wu:fc85c10

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(Including Attributions)
Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:101799]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi3593Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36983 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36984 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH psmc6 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH psmc6 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein catabolic process (more)
    Cellular Component cytoplasm (more)
    Molecular Function ATP binding (more)
    GO Terms (all 15)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003593 (1)
  • InterPro:IPR003959 (1)
  • InterPro:IPR003960 (1)
  • InterPro:IPR005937 (1)
  • InterPro:IPR027417 (1)
  • InterPro:IPR032501 (1)
  • InterPro:IPR035263 (1)
  • PROSITE:PS00674 (1)
  • Pfam:PF00004 (1)
  • Pfam:PF16450 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA psmc6-001 (1) 1561
    aberrant processed transcript psmc6-002 (1) 834
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM psmc6 No data available
    MARKER RELATIONSHIPS
    psmc6Contained in: [BAC] DKEY-29M11 (1) (order this), DKEY-63J12 (1) (order this)
    psmc6Encodes: [EST] fb20g04, fc85c10
    [cDNA] MGC:101799 (1) (order this), MGC:174720 (1) (order this), MGC:174721 (1) (order this), MGC:192916 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001003832 (1) 1554bp
    Genomic GenBank:BX936454 225683bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6DRD2 (1) 389aa
    Sequence Clusters UniGene:32860 (1)
    Sequence Information (all 33)
    OTHER psmc6 GENE PAGES
  • Alliance (1)
  • Gene:321585 (1)
  • VEGA:OTTDARG00000004035 (1)
  • ORTHOLOGY for psmc6 (Chr: 20)
    CITATIONS (25)