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ZIRC
ZFIN ID: ZDB-GENE-030131-2427
Gene Name: collagen, type VII, alpha 1
Gene Symbol: col7a1
Sequence Ontology ID : SO:0000704

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Previous Names: col7a1a (1), fc07e08, wu:fc07e08 (1)

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have serine-type endopeptidase inhibitor activity. Predicted to be involved in growth plate cartilage chondrocyte morphogenesis. Predicted to localize to the collagen-containing  ...
GENE EXPRESSION
All Expression Data: Fig. T2 from Li et al., 2011
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa1097 Point Mutation Unknown Premature Stop ENU
sa12429 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20771 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20772 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20773 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa26794 Point Mutation Unknown Splice Site ENU
    sa31533 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33920 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33921 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33922 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38571 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45261 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH col7a1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    autosomal dominant dystrophic epidermolysis bullosa Epidermolysis bullosa dystrophica, AD 131750
    nonsyndromic congenital nail disorder 8 Toenail dystrophy, isolated 607523
    recessive dystrophic epidermolysis bullosa EBD inversa 226600
    Epidermolysis bullosa dystrophica, AR 226600
    EBD, localisata variant
    Epidermolysis bullosa pruriginosa 604129
    Transient bullous of the newborn 131705
    EBD, Bart type 132000
    Epidermolysis bullosa, pretibial 131850
    DISEASE ASSOCIATED WITH col7a1 VIA EXPERIMENTAL MODELS No data available
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col7a1-202 (1) 10971
    col7a1-203 (1) 509
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM col7a1 No data available
    MARKER RELATIONSHIPS
    col7a1Contained in: [BAC] CH211-242N18 (1) (order this), DKEY-28N18 (1) (order this)
    col7a1Encodes: [EST] fc07e08
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_009302595 (1)
    Genomic GenBank:BX936393 (1) 204873bp Blast at MegaBLAST
    Polypeptide UniProtKB:E7FA40 (1) 3093aa
    Sequence Clusters UniGene:4482 (1)
    Sequence Information (all 18)
    ORTHOLOGY for col7a1 (Chr: 6)
    CITATIONS (17)