ZFIN ID: ZDB-GENE-030131-1835
Gene Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Gene Symbol: smarcd1    Nomenclature History

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Previous Names: BAF60a (1), wu:fa10h07, wu:fb82d01 (1), wu:fi45f10 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 22 Mapping Details/Browsers
Description: Involved in hemopoiesis; somite development; and spinal cord development. Predicted to localize to SWI/SNF complex; nBAF complex; and npBAF complex. Is expressed in ventricular zone. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome. Orthologous to human SMARCD1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1).
Genome Resources: Alliance (1),  Gene:323115 (1),  Ensembl(GRCz11):ENSDARG00000019004 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55436]
  7 figures (8 images) from Thisse et al., 2008 [bc049347]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa24071 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32371 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32372 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-smarcd1
    1
    CRISPR2-smarcd1
    1
    CRISPR3-smarcd1
    1
    CRISPR4-smarcd1
    1
    MO1-smarcd1 N/A 1
    MO2-smarcd1 N/A 1
    MO3-smarcd1 N/A 1
    DISEASE ASSOCIATED WITH smarcd1 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Coffin-Siris syndrome 11 618779
    DISEASE ASSOCIATED WITH smarcd1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process definitive hemopoiesis (more)
    Cellular Component nBAF complex (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA smarcd1-201 (1)    Ensembl 2697
    ncRNA smarcd1-002 (1)    Ensembl 811
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM smarcd1 No data available
    MARKER RELATIONSHIPS
    smarcd1 Contained in: [BAC] CH73-213K20 (1), CH211-157P5 (1)
    smarcd1 Encodes: [EST] bc049347 (1), fa10h07, fb82d01, fi45f10 (1)
    [cDNA] MGC:55436 (1), MGC:85846 (1), MGC:192453 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_198358 (1) 2747 nt
    Genomic GenBank:CR450748 (1) 191667 nt
    Select Tool
    Polypeptide UniProtKB:Q802C8 (1) 510 aa
    Sequence Information (all 20)
    ORTHOLOGY for smarcd1 ( Chr: 22 )
    CITATIONS (28)