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ZIRC
ZFIN ID: ZDB-GENE-030131-1683
Gene Name: si:ch211-198a12.6
Gene Symbol: si:ch211-198a12.6    Nomenclature History

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Previous Names: fa08f12, fb72e11, fb77h12, fc06d05, fe14e05, id:ibd2708, wu:fa08f12, wu:fb72e11, wu:fb77h12 (1), wu:fc06d05, wu:fe14e05

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 13 Mapping Details/Browsers
Description: Predicted to have metal ion binding activity and nucleic acid binding activity. Predicted to localize to the nucleus. Is expressed in brain; immature eye; midbrain; and otic vesicle. Orthologous to human ZSCAN2 (zinc finger and SCAN domain containing 2); ZNF22 (zinc finger protein 22); and ZNF529 (zinc finger protein 529).
Genome Resources: Alliance (1),  Gene:563253 (1),  Ensembl(GRCz11):ENSDARG00000074624 (1)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (2 images) from Kudoh et al., 2001 [ibd2708]
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa9995 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH si:ch211-198a12.6 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH si:ch211-198a12.6 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Molecular Function metal ion binding (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR013087 (1)
  • InterPro:IPR036236 (1)
  • PROSITE:PS00028 (1)
  • PROSITE:PS50157 (1)
  • Pfam:PF00096 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA si:ch211-198a12.6-201 (1)    Ensembl 3579
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM si:ch211-198a12.6 No data available
    MARKER RELATIONSHIPS
    si:ch211-198a12.6 Contained in: [BAC] CH211-198A12 (1) (order this)
    si:ch211-198a12.6 Encodes: [EST] fa08f12, fb72e11, fb77h12, fc06d05, fe14e05, ibd2708 (order this)
    si:ch211-198a12.6 Has Artifact: [EST] fb96g04
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001145579 (1) 3579 bp
    Genomic GenBank:BX908770 (1) 126240 bp
    Select Tool
    Polypeptide UniProtKB:B8A688 (1) 524 aa
    Sequence Clusters UniGene:75540 (1)
    Sequence Information (all 29)
    ORTHOLOGY for si:ch211-198a12.6 ( Chr: 13 )
    CITATIONS (15)