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ZIRC
ZFIN ID: ZDB-GENE-030131-1291
Gene Name: ribosomal protein L3
Gene Symbol: rpl3
Sequence Ontology ID : SO:0000704

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Previous Names: wu:fa99g02, wu:fb65e09, zgc:110350

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be a structural constituent of ribosome. Involved in exocrine pancreas development. Predicted to localize to the cytosolic large ribosomal subunit. Used to study Shwachman-Diamond  ...
GENE EXPRESSION
All Expression Data: 3 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:110350]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi2437Tg Transgenic Insertion Intron 2 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16344 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20025 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH rpl3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rpl3 VIA EXPERIMENTAL MODELS
    Human Disease Fish Conditions Citations
    Shwachman-Diamond syndrome rpl3hi2437Tg/+; jh1Tg; jh2Tg standard conditions Provost et al., 2012
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process exocrine pancreas development (more)
    Cellular Component ribosome (more)
    Molecular Function structural constituent of ribosome (more)
    GO Terms (all 7)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA rpl3-002 (1) 801
    mRNA rpl3-201 (1) 1382
    rpl3-202 (1) 738
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rpl3 No data available
    MARKER RELATIONSHIPS
    rpl3Contained in: [BAC] DKEY-151M15 (1) (order this)
    rpl3Encodes: [EST] fa99g02 (1), fb65e09
    [cDNA] MGC:110350 (1) (order this), MGC:191959 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001001590 (1) 1371bp
    Genomic GenBank:BX901883 (1) 241961bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q5BJJ2 (1) 403aa
    Sequence Clusters UniGene:141319 (1)
    Sequence Information (all 20)
    ORTHOLOGY for rpl3 (Chr: 3)
    CITATIONS (35)