ZFIN ID: ZDB-GENE-030113-3
Gene Name: calpain, small subunit 1 a
Gene Symbol: capns1a    Nomenclature History

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Previous Names: capns1, cb616 (1), wu:fb81g08 (1), wu:fl09e04 (1), zgc:110603, zgc:86795

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Is expressed in several structures, including EVL; digestive system; epidermis; pectoral fin bud; and pronephros. Orthologous to several human genes including CAPNS1 (calpain small subunit 1).
Genome Resources: Alliance (1),  Gene:550598 (1),  Ensembl(GRCz11):ENSDARG00000035329 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa6992 Point Mutation Unknown Splice Site ENU
PHENOTYPE No data available
DISEASE ASSOCIATED WITH capns1a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH capns1a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Molecular Function calcium ion binding (more)
GO Terms (all 1)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA capns1a-201 (1)    Ensembl 1259
capns1a-202 (1)    Ensembl 1029
capns1a-203 (1)    Ensembl 1287
ncRNA capns1a-003 (1)    Ensembl 739
capns1a-005 (1)    Ensembl 510
capns1a-006 (1)    Ensembl 671
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM capns1a No data available
MARKER RELATIONSHIPS
capns1a Contained in: [BAC] CH211-222C22 (1)
capns1a Encodes: [EST] cb616 (1) (order this), fb81g08, fl09e04
[cDNA] MGC:110603 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001017899 (1) 1365 nt
Genomic GenBank:BX005407 (1) 209796 nt Blast at MegaBLAST
Polypeptide UniProtKB:Q1LYC9 (1) 216 aa
Sequence Information (all 18)
ORTHOLOGY for capns1a ( Chr: 5 )
CITATIONS (29)