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General Information
ZIRC
ZFIN ID: ZDB-GENE-021031-4
Gene Name: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
Gene Symbol: plod3
Sequence Ontology ID : SO:0000704

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Previous Names: lh3 (1), cb479 (1), cb816 (1), diw, diwanka, fb72h05, im:6912725, wu:fb72f10, wu:fb72h05

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(Including Attributions)
Location: Chr: 23 Mapping Details/Browsers
Nomenclature History
Note:
AUTOMATED DESCRIPTION
Predicted to have procollagen-lysine 5-dioxygenase activity. Involved in motor neuron axon guidance and neural crest cell migration. Predicted to localize to the collagen trimer. Orthologous to human  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la014464Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • ts286 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • tv205a Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tz290 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • DISEASE ASSOCIATED WITH plod3 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Lysyl hydroxylase 3 deficiency 612394
    DISEASE ASSOCIATED WITH plod3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process motor neuron axon guidance (more)
    Cellular Component collagen trimer (more)
    Molecular Function dioxygenase activity (more)
    GO Terms (all 10)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA plod3-002 (1) 759
    plod3-004 (1) 763
    mRNA plod3-201 (1) 2538
    plod3-202 (1) 833
    aberrant processed transcript plod3-204 (1) 836
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    MARKER RELATIONSHIPS
    plod3Contained in: [BAC] CH73-269M23 (1) (order this), CH73-361H17 (1) (order this), DKEY-232A10 (1) (order this)
    [PAC] BUSM1-182C22 (1) (order this)
    plod3Encodes: [EST] cb479 (1) (order this), cb816 (1) (order this), fb72f10, fb72h05, IMAGE:6912725 (1) (order this)
    [cDNA] MGC:162023 (1) (order this), MGC:194964 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001044343 (1) 2573bp
    Genomic GenBank:BX255941 (1) 107132bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8QKS4 (1) 730aa
    Sequence Clusters UniGene:75149 (1)
    Sequence Information (all 34)
    ORTHOLOGY for plod3 (Chr: 23)
    CITATIONS (41)