ZFIN ID: ZDB-GENE-020905-2
Gene Name: coatomer protein complex, subunit alpha
Gene Symbol: copa
Sequence Ontology ID : SO:0000704

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Previous Names: cb281 (1), fb13c12, sneezy, wu:fb13c12

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(Including Attributions)
Location: Chr: 2 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 10 figures from 5 publications
Directly Submitted Expression Data: 6 figures (6 images) from Thisse et al., 2001 [cb281]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:7152734]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  axis, cleithrum, hatching gland, mesoderm (all 9) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi1872Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • hi2203Tg Transgenic Insertion Unknown Unknown DNA
    hi3669Tg Transgenic Insertion Unknown Unknown DNA
    la010427Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • m456 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • td204a Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tm11 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tm75 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tn211 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tq249b Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Targeting reagents: MO1-copa (1)
    PHENOTYPE
    Data: 22 figures from 7 publications
    Observed in: brain, cranial nerve II, developmental pigmentation, head (all 22) expand
    DISEASE ASSOCIATED WITH copa HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    {Autoimmune interstitial lung, joint, and kidney disease} 616414
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process notochord development (more)
    Cellular Component COPI vesicle coat (more)
    Molecular Function structural molecule activity (more)
    GO Terms (all 16)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001680 (1)
  • InterPro:IPR006692 (1)
  • InterPro:IPR010714 (1)
  • InterPro:IPR011990 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR016391 (1)
  • InterPro:IPR017986 (1)
  • InterPro:IPR019775 (1)
  • InterPro:IPR020472 (1)
  • PROSITE:PS00678 (1)
  • PROSITE:PS50082 (1)
  • PROSITE:PS50294 (1)
  • Pfam:PF00400 (1)
  • Pfam:PF04053 (1)
  • Pfam:PF06957 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA copa-001 (1) 4131
    ncRNA copa-002 (1) 717
    copa-003 (1) 791
    copa-004 (1) 784
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM copa No data available
    MARKER RELATIONSHIPS
    copaContained in: [BAC] DKEY-52K20 (1) (order this)
    copaEncodes: [EST] cb281 (1) (order this), fb13c12, IMAGE:7152734 (1) (order this)
    [cDNA] MGC:171377 (1) (order this), MGC:193571 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001001941 (1) 4261bp
    Genomic GenBank:BX649372 (1) 249584bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6JWU9 (1) 1226aa
    Sequence Clusters UniGene:2921 (1)
    Sequence Information (all 26)
    OTHER copa GENE PAGES
  • Alliance (1)
  • Gene:260439 (1)
  • VEGA:OTTDARG00000019960 (1)
  • Ensembl(GRCz10):ENSDARG00000004173 (1)
  • ORTHOLOGY for copa (Chr: 2)
    CITATIONS (39)