| ZFIN ID: ZDB-GENE-020905-2 |
| Gene Name: | COPI coat complex subunit alpha | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene Symbol: | copa Nomenclature History |
{{control.fieldName}} Edit
Attributions
|
||||||||||||
| Previous Names: | cb281 (1), fb13c12, sneezy, wu:fb13c12 | |||||||||||||
Add new Alias
Attributions for Alias: {{control.newAlias}}
Delete Alias:(Including Attributions) |
||||||||||||||
| Gene Type: | protein_coding_gene | |||||||||||||
| Location: | Chr: 2 Mapping Details/Browsers | |||||||||||||
| Description: | Predicted to have structural molecule activity. Involved in notochord development and somite development. Predicted to localize to COPI vesicle coat. Is expressed in several structures, including axis; hatching gland; mesoderm; notochord; and pectoral fin. Orthologous to human COPA (COPI coat complex subunit alpha). | |||||||||||||
| Genome Resources: | Alliance (1), Gene:260439 (1), Ensembl(GRCz11):ENSDARG00000004173 (2) | |||||||||||||
| All Expression Data: | 10 figures from 5 publications |
| Directly Submitted Expression Data: | 6 figures (6 images) from Thisse et al., 2001 [cb281] |
| 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7152734] | |
| Wild-type Stages, Structures: | Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h) |
| High Throughput Expression: | GEO (1) , Expression Atlas (1) |
MUTATIONS AND SEQUENCE TARGETING REAGENTS
| Allele | Type | Localization | Consequence | Mutagen | Suppliers |
|---|---|---|---|---|---|
| hi1872Tg | Transgenic Insertion | 5' UTR | Unknown | DNA |
|
| hi2203Tg | Transgenic Insertion | Intron 1 | Unknown | DNA | |
| hi3669Tg | Transgenic Insertion | Intron 1 | Unknown | DNA | |
| la010427Tg | Transgenic Insertion | Unknown | Unknown | DNA |
|
| m456 | Point Mutation | Donor Splice Site | Cryptic Acceptor Splice Site, Frameshift, Premature Stop | ENU |
|
| td204a | Unknown | Unknown | Unknown | ENU |
|
| tm11 | Unknown | Unknown | Unknown | ENU |
|
| tm75 | Unknown | Unknown | Unknown | ENU |
|
| tn211 | Unknown | Unknown | Unknown | ENU |
|
| tq249b | Unknown | Unknown | Unknown | ENU |
|
PHENOTYPE
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| {Autoimmune interstitial lung, joint, and kidney disease} | 616414 |
GENE ONTOLOGY
| Ontology | GO Term |
|---|---|
| Biological Process | notochord development (more) |
| Cellular Component | COPI vesicle coat (more) |
| Molecular Function | structural molecule activity (more) |
| Type | Name | Length (nt) | Analysis | |
|---|---|---|---|---|
| mRNA |
copa-201
(1)
|
4131 |
Select Tool
|
|
| ncRNA |
copa-002
(1)
|
717 |
Select Tool
|
|
|
copa-003
(1)
|
791 |
Select Tool
|
||
|
copa-004
(1)
|
784 |
Select Tool
|
| Browsers: UCSC, NCBI, Ensembl, ZFIN |
INTERACTIONS AND PATHWAYS
ANTIBODIES
No data available
PLASMIDS
No data available
CONSTRUCTS WITH SEQUENCES FROM copa
No data available
MARKER RELATIONSHIPS
| copa Contained in: | [BAC] DKEY-52K20 (1) (order this) |
| copa Encodes: |
[EST]
cb281 (1) (order this),
fb13c12,
IMAGE:7152734 (1)
[cDNA] MGC:171377 (1), MGC:193571 (1) |
SEQUENCE INFORMATION
| Type | Accession # | Length (nt/aa) | Analysis |
|---|---|---|---|
| RNA | RefSeq:NM_001001941 (1) | 4261 nt |
Select Tool
|
| Genomic | GenBank:BX649372 (1) | 249584 nt | Blast at MegaBLAST |
| Polypeptide | UniProtKB:Q6JWU9 (1) | 1226 aa |
Select Tool
|
ORTHOLOGY for copa (
Chr:
2
)
CITATIONS (46)