ZFIN ID: ZDB-GENE-020419-23
Gene Name: ATPase, H+ transporting, lysosomal, V0 subunit ca
Gene Symbol: atp6v0ca
Previous Names: atp6l, atp6v0c, cb993 (1), CHUNP6904, fb57d09, wu:fb57d09 (1)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 27 figures from 8 publications
Directly Submitted Expression Data: 6 figures (7 images) from Thisse et al., 2001 [cb993]
  12 figures (28 images) from Rauch et al., 2003 [fb57d09]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
  anatomical structure, blood, brain, epidermis (all 28) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi1207Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents: MO1-atp6v0ca (2), MO2-atp6v0ca (1)
    PHENOTYPE
    Data: 11 figures from 9 publications
    Observed in: brain, cell aging, central nervous system, embryonic retina morphogenesis in camera-type eye (all 25) expand
    DISEASE ASSOCIATED WITH atp6v0ca HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process response to yeast (more)
    Cellular Component integral component of membrane (more)
    Molecular Function hydrogen ion transmembrane transporter activity (more)
    GO Terms (all 17)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000245 (1)
  • InterPro:IPR002379 (1)
  • InterPro:IPR011555 (1)
  • Pfam:PF00137 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA atp6v0ca-001 (1) 1237
    atp6v0ca-002 (1) 1522
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM atp6v0ca No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    atp6v0caContained in: [BAC] DKEY-81L17 (1) (order this)
    atp6v0caEncodes: [BAC END] zk7n14
    [EST] cb993 (1) (order this), fb57d09 (order this)
    [STS] atp6l
    [cDNA] MGC:76969 (1) (order this), MGC:174785 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_173255 (1) 1600bp
    Genomic GenBank:CR387933 (1) 182618bp
    Select Tool
    Polypeptide UniProtKB:A7MCQ9 (1) 154aa
    Sequence Clusters UniGene:105015 (1)
    Sequence Information (all 22)
    OTHER atp6v0ca GENE PAGES
  • Gene:192336 (1)
  • VEGA:OTTDARG00000027140 (1)
  • Ensembl(GRCz10):ENSDARG00000057853 (1)
  • ORTHOLOGY for atp6v0ca (Chr: 3)
    Species Symbol Chromosome Accession # Evidence
    Human ATP6V0C 16
  • Gene:527
  • OMIM:108745
  • HGNC:855
  • Amino acid sequence comparison (2)
    Conserved genome location (synteny) (1)
    Mouse Atp6v0c 17
  • MGI:88116
  • Gene:11984
  • Amino acid sequence comparison (2)
    Conserved genome location (synteny) (1)
    Download Curated Orthology
    CITATIONS (34)