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ZIRC
ZFIN ID: ZDB-GENE-020419-22
Gene Name: splicing factor 3b, subunit 4
Gene Symbol: sf3b4
Sequence Ontology ID : SO:0000704

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Previous Names: chunp6902, fb36a04, wu:fb36a04 (1)

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to localize to the U12-type spliceosomal complex and nucleolus.  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:85842]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi1159Tg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • hi4070Tg Transgenic Insertion Intron 1 Unknown DNA
    la020945Tg Transgenic Insertion Unknown Unknown DNA
    la020946Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE
    Data: 3 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH sf3b4 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Nager acrofacial dysostosis Acrofacial dysostosis 1, Nager type 154400
    DISEASE ASSOCIATED WITH sf3b4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process positive regulation of mRNA splicing, via spliceosome (more)
    Cellular Component nucleolus (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 8)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sf3b4-201 (1) 1391
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sf3b4 No data available
    MARKER RELATIONSHIPS
    sf3b4Contained in: [BAC] CH73-312O15 (1) (order this), CH211-210H11 (1) (order this), DKEYP-84F11 (1)
    sf3b4Encodes: [EST] fb36a04 (1)
    [STS] chunp6902
    [cDNA] MGC:65961 (1) (order this), MGC:85842 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_153661 (1) 1387bp
    Genomic GenBank:BX890617 182182bp
    Select Tool
    Polypeptide UniProtKB:Q6NWB3 (1) 400aa
    Sequence Clusters UniGene:1505 (1)
    Sequence Information (all 24)
    ORTHOLOGY for sf3b4 (Chr: 19)
    CITATIONS (32)