ZFIN ID: ZDB-GENE-011119-1
Gene Name: glypican 4
Gene Symbol: gpc4
Sequence Ontology ID : SO:0000704

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Previous Names: gpc4/6, gpc6, chunp6920, fc47a08, fe05f10, kny (1), knypek (1), wu:fc47a08 (1), wu:fe05f10 (1), zgc:194854

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(Including Attributions)
Location: Chr: 14 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 7 figures from 5 publications
Wild-type Stages, Structures: Cleavage:8-cell (1.25h-1.5h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
  axial chorda mesoderm, blastomere, intestine, muscle cell (all 8) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
b404 Unknown Unknown Unknown G_RAYS
b639 Unknown Unknown Unknown ENU
fr6 Point Mutation Unknown Unknown ENU
gpc4_unspecified Unspecified Unknown Unknown
hi1688Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • hi1934Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la012557Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • m119 Point Mutation Unknown Unknown ENU
    m818 Point Mutation Unknown Unknown ENU
    sa9771 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11933 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa22505 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • st3 Deficiency Unknown Unknown ENU
    u34.8 Unknown Unknown Unknown
    vu4 Unknown Unknown Unknown G_RAYS
    vu5 Unknown Unknown Unknown G_RAYS
    vu8 Unknown Unknown Unknown G_RAYS
    Targeting reagents: MO1-gpc4 (1), MO2-gpc4 (1)
    PHENOTYPE
    Data: 44 figures from 24 publications
    Observed in: adaxial cell, anterior neural plate, axis, cell extracellular matrix (all 60) expand
    DISEASE ASSOCIATED WITH gpc4 HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cell migration involved in gastrulation (more)
    Cellular Component anchored component of membrane (more)
    Molecular Function protein binding (more)
    GO Terms (all 24)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001863
  • InterPro:IPR031180
  • Pfam:PF01153
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA gpc4-001 (1) 3998
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM gpc4 No data available
    MARKER RELATIONSHIPS
    gpc4Contained in: [BAC] CH211-191O15 (1) (order this), DKEY-57B1 (1) (order this)
    gpc4Encodes: [EST] fc47a08, fe05f10 (1)
    [STS] chunp6920
    [cDNA] MGC:194854 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131860 (1) 1822bp
    Genomic GenBank:BX530080 (1) 165220bp
    Select Tool
    Polypeptide UniProtKB:B3DJ94 557aa
    Sequence Clusters UniGene:78935 (1)
    Sequence Information (all 19)
    OTHER gpc4 GENE PAGES
  • Gene:118437 (1)
  • VEGA:OTTDARG00000027978 (1)
  • Ensembl(GRCz10):ENSDARG00000015472 (1)
  • ORTHOLOGY for gpc4 (Chr: 14)
    CITATIONS (88)