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General Information
ZIRC
ZFIN ID: ZDB-GENE-010724-2
Gene Name: calpain 9
Gene Symbol: capn9
Sequence Ontology ID : SO:0000704

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Previous Names: cb545 (1), fb77d06, wu:fb77d06, zgc:92451

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(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have calcium-dependent cysteine-type endopeptidase activity; predicted to be involved in proteolysis; predicted to localize to the cytoplasm; orthologous to human CAPN9 (calpain 9).
GENE EXPRESSION
All Expression Data: 15 figures from 4 publications
Directly Submitted Expression Data: 6 figures (15 images) from Thisse et al., 2001 [cb545]
  6 figures (6 images) from Thisse et al., 2004 [IMAGE:7152126]
Wild-type Stages, Structures: Blastula:30%-epiboly (4.66h-5.25h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa25682 Point Mutation Unknown Splice Site ENU
sa39702 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zko1072a Small Deletion Unknown Unknown CRISPR
    zko1072b Small Deletion Unknown Unknown CRISPR
    Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH capn9 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH capn9 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process digestion (more)
    Cellular Component cytoplasm (more)
    Molecular Function calcium-dependent cysteine-type endopeptidase activity (more)
    GO Terms (all 8)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA capn9-201 (1) 2668
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM capn9 No data available
    MARKER RELATIONSHIPS
    capn9Contained in: [BAC] CH73-59B17 (1) (order this), CH211-52O18 (1) (order this)
    capn9Encodes: [EST] cb545 (1) (order this), fb77d06 (1), IMAGE:7152126 (1) (order this)
    [cDNA] MGC:92451 (1) (order this), MGC:193080 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001003501 (1) 2645bp
    Genomic GenBank:FP017162 (1) 76731bp
    Select Tool
    Polypeptide UniProtKB:F1RCJ4 (1) 688aa
    Sequence Clusters UniGene:77287 (1)
    Sequence Information (all 19)
    ORTHOLOGY for capn9 (Chr: 1)
    CITATIONS (24)