ZFIN ID: ZDB-GENE-010328-2
Gene Name: claudin b
Gene Symbol: cldnb
Sequence Ontology ID : SO:0000704

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Previous Name: wu:fa66b05

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(Including Attributions)
Location: Chr: 21 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 27 figures from 12 publications
Directly Submitted Expression Data: 6 figures (20 images) from Thisse et al., 2005 [eu135]
  7 figures (21 images) from Thisse et al., 2004 [MGC:92382]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Adult (90d-730d, breeding adult)
  brain, epidermis, EVL, eye (all 30) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ihb154 Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • Targeting reagents: CRISPR1-cldnb (1), MO1-cldnb (1)
    PHENOTYPE
    Data: 4 figures from Kwong et al., 2013
    Observed in: blood, caudal fin, pericardial cavity, sodium ion export (all 7) expand
    DISEASE ASSOCIATED WITH cldnb HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process neuromast development (more)
    Cellular Component bicellular tight junction (more)
    Molecular Function structural molecule activity (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR004031 (1)
  • InterPro:IPR006187 (1)
  • Pfam:PF00822 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cldnb-001 (1) 1107
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Ab1-cldnb (1), Ab2-cldnb (1), Ab3-cldnb (1)
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM cldnb
    tg(-8.0cldnb:gal4-vp16), Tg(-8.0cldnb:H2A-mCherry), Tg(-8.0cldnb:LY-EGFP), Tg(cldnb:ERT2-GAL4), Tg(cldnb:ERT2-GAL4-VP16) (all 9) expand
    MARKER RELATIONSHIPS
    cldnbContained in: [BAC] DKEY-54M16 (1) (order this)
    cldnbEncodes: [EST] eu135 (1), fa66b05
    [cDNA] MGC:92382 (1) (order this), MGC:191160 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131763 (1) 1149bp
    Genomic GenBank:CR847847 (1) 76887bp
    Select Tool
    Polypeptide UniProtKB:Q90XR8 (1) 215aa
    Sequence Clusters UniGene:76013 (1)
    Sequence Information (all 16)
    OTHER cldnb GENE PAGES
  • Alliance (1)
  • Gene:81581 (1)
  • VEGA:OTTDARG00000028215 (1)
  • Ensembl(GRCz10):ENSDARG00000009544 (1)
  • ORTHOLOGY for cldnb (Chr: 21)
    CITATIONS (50)