ZFIN ID: ZDB-GENE-010328-10
Gene Name: claudin j
Gene Symbol: cldnj    Nomenclature History

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Previous Names: fc30g01, wu:fc30g01

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Ambiguous Mapping Details/Browsers
Description: Predicted to have structural molecule activity. Involved in lifelong otolith mineralization. Predicted to localize to bicellular tight junction and plasma membrane. Is expressed in central nervous system; otic epithelium; otic vesicle; and ovary.
Genome Resources: Alliance (1),  Gene:81589 (1),  Ensembl(GRCz11):ENSDARG00000058880 (1)
GENE EXPRESSION
All Expression Data: 5 figures from 4 publications
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi340aTg Transgenic Insertion 3' UTR Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la025025Tg Transgenic Insertion Unknown Unknown DNA
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-cldnj N/A 1
    PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH cldnj HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cldnj VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process lifelong otolith mineralization (more)
    Cellular Component bicellular tight junction (more)
    Molecular Function structural molecule activity (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA cldnj-201 (1)    Ensembl 1471
    zgc:153990-201 (1)    Ensembl 2587
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cldnj No data available
    MARKER RELATIONSHIPS
    cldnj Contained in: [BAC] CH211-222C22 (1), CH211-235M3 (1)
    cldnj Contains: [SNP] rs3727877 (1), rs3727878 (1)
    cldnj Encodes: [EST] fa04h05, fc01e04 (1), fc30g01
    [cDNA] MGC:194904 (1), MGC:194907 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_131769 (1) 3542 nt
    Genomic GenBank:BX005407 (1) 209796 nt Blast at MegaBLAST
    Polypeptide UniProtKB:F1QVR6 (1) 210 aa
    Sequence Information (all 21)
    ORTHOLOGY for cldnj ( Ambiguous )
    CITATIONS (41)