ZFIN ID: ZDB-GENE-001205-1
Gene Name: colony stimulating factor 1 receptor, a
Gene Symbol: csf1ra
Sequence Ontology ID : SO:0000704

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Previous Names: c-fms (1), csf1r, fms (1), pfe (1), sal (1), salz (1), panther, pfeffer (1)

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(Including Attributions)
Location: Chr: 14 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 62 figures from 41 publications
Directly Submitted Expression Data: 7 figures (8 images) from Thisse et al., 2008 [cssl:d116]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
csf1ra_unspecified Unspecified Unknown Unknown
j4blue Unknown Unknown Unknown
j4e1 Point Mutation Unknown Unknown ENU
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • j4e2 Point Mutation Unknown Unknown ENU
    mh5 Unknown Unknown Unknown ENU
    sa9484 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15067 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa22726 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • tb213c Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tc227b Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • te220 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tf34 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tf238b Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tg17 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tg283a Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tl241 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tm236b Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tm246b Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tp71c Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tq211 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tt254a Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • utr4e174A Point Mutation Unknown Unknown ENU
    utr4e536 Unknown Unknown Unknown ENU
    utr4e564 Unknown Unknown Unknown ENU
    Targeting reagents:
    PHENOTYPE
    Data: 46 figures from 19 publications
    Observed in:
    DISEASE ASSOCIATED WITH csf1ra HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Leukoencephalopathy, diffuse hereditary, with spheroids 221820
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process developmental pigmentation (more)
    Cellular Component integral component of membrane (more)
    Molecular Function ATP binding (more)
    GO Terms (all 29)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000719 (1)
  • InterPro:IPR001245 (1)
  • InterPro:IPR001824 (1)
  • InterPro:IPR003598 (1)
  • InterPro:IPR003599 (1)
  • InterPro:IPR007110 (1)
  • InterPro:IPR008266 (1)
  • InterPro:IPR011009 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR017441 (1)
  • InterPro:IPR020635 (1)
  • InterPro:IPR030658 (1)
  • InterPro:IPR036179 (1)
  • PROSITE:PS00107 (1)
  • PROSITE:PS00109 (1)
  • PROSITE:PS00240 (1)
  • PROSITE:PS50011 (1)
  • PROSITE:PS50835 (1)
  • Pfam:PF07714 (1)
  • EC:2.7.10.1 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA csf1ra-001 (1) 3459
    ncRNA csf1ra-002 (1) 2788
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM csf1ra
    MARKER RELATIONSHIPS
    csf1raContained in: [Fosmid] CH1073-425O22 (1) (order this), ZFOS-1069F5 (1)
    csf1raEncodes: [cDNA] cssl:d116 (1) (order this), MGC:194643 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131672 (1) 3581bp
    Genomic GenBank:FP102999 (1) 40159bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8Q9U7 (1) 977aa
    Sequence Clusters UniGene:133025 (1)
    Sequence Information (all 29)
    OTHER csf1ra GENE PAGES
  • Alliance (1)
  • Gene:64274 (1)
  • VEGA:OTTDARG00000041894 (1)
  • Ensembl(GRCz11):ENSDARG00000102986 (1)
  • ORTHOLOGY for csf1ra (Chr: 14)
    CITATIONS (154)