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ZIRC
ZFIN ID: ZDB-GENE-001128-1
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Gene Name: ephrin-A5a
Gene Symbol: efna5a    Nomenclature History

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Previous Names: cb1080 (1), fl02c06, L2, wu:fl02c06

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 21 Mapping Details/Browsers
Description: Predicted to have ephrin receptor binding activity. Predicted to be involved in axon guidance and ephrin receptor signaling pathway. Predicted to localize to the plasma membrane. Is expressed in several structures, including anterior neural keel; immature eye; nervous system; neural plate; and neural tube. Orthologous to human EFNA5 (ephrin A5).
Genome Resources: Alliance (1),  Gene:64256 (1),  Ensembl(GRCz11):ENSDARG00000089790 (2)
GENE EXPRESSION
All Expression Data: 19 figures from 13 publications
Directly Submitted Expression Data: 5 figures (13 images) from Thisse et al., 2001 [cb1080]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la014000Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la014001Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la021866Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la028316Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH efna5a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH efna5a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process ephrin receptor signaling pathway (more)
    Cellular Component membrane (more)
    Molecular Function ephrin receptor binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001799 (1)
  • InterPro:IPR008972 (1)
  • InterPro:IPR019765 (1)
  • InterPro:IPR031328 (1)
  • InterPro:IPR034252 (1)
  • PROSITE:PS01299 (1)
  • PROSITE:PS51551 (1)
  • Pfam:PF00812 (1)
    • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA efna5a-201 (1)    Ensembl 4685
    Select Tool
    Browsers: NCBI,  Ensembl,  ZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM efna5a No data available
    MARKER RELATIONSHIPS
    efna5a Contained in: [BAC] CH211-22D5 (1) (order this), DKEY-6O9 (1) (order this), DKEY-30K6 (1) (order this)
    efna5a Encodes: [EST] cb1080 (1) (order this), fl02c06
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_001337352 (1)
    Select Tool
    Genomic GenBank:AL844141 (1) 257634 bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1R203 (1) 237 aa
    Select Tool
    Sequence Clusters UniGene:122564 (1)
    Sequence Information (all 25)
    ORTHOLOGY for efna5a ( Chr: 21 )
    CITATIONS (36)