ZFIN ID: ZDB-GENE-001030-4
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Gene Name: paired box 2b
Gene Symbol: pax2b
Sequence Ontology ID : SO:0000704

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Previous Names: pax2.2, Pax2.2

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(Including Attributions)
Location: Chr: 12 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 14 figures from 10 publications
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Larval:Days 7-13 (168.0h-14d, 4.5mm, 8 teeth)
  ectoderm, hindbrain neuron, midbrain hindbrain boundary, midbrain hindbrain boundary neural keel (all 14) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa10953 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Targeting reagents: MO1-pax2b
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pax2b HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    focal segmental glomerulosclerosis 7 Glomerulosclerosis, focal segmental, 7 616002
    renal coloboma syndrome Papillorenal syndrome 120330
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process peripheral nervous system development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001523 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR011991 (1)
  • InterPro:IPR022130 (1)
    		•
  • PROSITE:PS00034 (1)
  • PROSITE:PS51057 (1)
    		•
  • Pfam:PF00292 (1)
  • Pfam:PF12403 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA pax2b-001 (1) 1467
    Select Tool
    pax2b-002 (1) 735
    Select Tool
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pax2b No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    pax2bContained in: [Fosmid] CH1073-86F9 (1) (order this), ZFOS-1346H10 (1)
    pax2bEncodes: [cDNA] MGC:193755 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131640 (1) 2652bp
    Select Tool
    Genomic GenBank:CU565473 (1) 43485bp
    Select Tool
    Polypeptide UniProtKB:F1R139 (1) 386aa
    Select Tool
    Sequence Clusters UniGene:81269 (1)
    Sequence Information (all 18)
    OTHER pax2b GENE PAGES
  • Gene:60638 (1)
  • VEGA:OTTDARG00000035648 (1)
  • Ensembl(GRCz10):ENSDARG00000032578 (1)
    • ORTHOLOGY for pax2b (Chr: 12)
    CITATIONS (42)