ZFIN ID: ZDB-GENE-000616-10
Gene Name: smx5
Gene Symbol: smx5    Nomenclature History

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Previous Names: wu:fe48h10, zgc:101795

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 6 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to Lsm1-7-Pat1 complex; P-body; and nucleus. Orthologous to human LSM2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated).
Genome Resources: Alliance (1),  Gene:57924 (1), 
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6903941]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH smx5 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH smx5 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA processing (more)
Cellular Component nucleus (more)
Molecular Function RNA binding (more)
GO Terms (all 12)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA smx5-201 (1)    Ensembl 752
Browsers: NCBI
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM smx5 No data available
MARKER RELATIONSHIPS
smx5 Contained in: [BAC] CH73-14H10 (1), DKEYP-30B3 (1)
smx5 Encodes: [EST] fe48h10 (1), IMAGE:6903941 (1)
[cDNA] MGC:101795 (1), MGC:173750 (1), MGC:191610 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_131496 (1) 1144 nt
Genomic GenBank:CR847938 169257 nt
Select Tool
Polypeptide UniProtKB:A0A2R8QU40 (1) 100 aa
Sequence Information (all 30)
ORTHOLOGY for smx5 ( Chr: 6 )
CITATIONS (17)