Genomic Feature
um239
- ID
- ZDB-ALT-180814-3
- Name
- um239
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one delins (1)
- Protocol
- embryos treated with
- Lab of Origin
- Sagerström Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Delins
- Variant Location
- Chr 25: 18327622 - 18329887 (GRCz11) (1) Details
- Nucleotide change
- GCAGGACCTCACGTGGACTCGAGAGGGTCCAACTGAAAAACGTTGTGATTGGTTGGTGTGGTGAAGTACAGTGGCTGGGTTGGGGCCGGCACACGGTTATCACACGGACTCTTGAGTCCTAACGTGCGCTCAAAGTCCAAGAGTTGACCCATGAAGTTAAAGTTGGGCGAGATGTTCGACTTCTTCATTTTGACAATGTCATAAGCATCGTTCATGGACAGGTTGAGCTTCTGCATGAGGTACGCCACTGTTACAGTGACAGAACGACTGATGCCTGCAAGGCAGTGAACAAGCACGCCACACTTCAGTCCACGGGCCTCATCTGAGGGAAAAAAAGGACAAGATGATTAGTTATCTGTGTGCAACTTACTTATGAATATGCAATTGCACATAACCTCGGTTGTCAGAATTCATTACACTCCCTGCGCTGACAAAGGGGGCCTCATTCAGTGGGATTTCTAGTGCATGACTGAAAACAACTCGCCTATTTTGTCTGAGAATGTGACGTGGAAATGGGCTGTTAAGGTTAATCAAATGATCCTTCCGCTCGTCAGGTTACTTGACAATGGTACCATTTGGGCGTGTAAATGTAGAAGTCATGGCAGCGCCCTGTCAAGGCTAACAGGATGTCAACAGTGCCCTGTAAATGGTCCTCATTGTGTGGCGAAACATTGCTCTGTCCTAGATTACTTTCAATGCTGCTTGCTTCCTTCCTGTTGAGCTCAAATTACCGCCTCCCCCCTCCATCTCCCGTTTCATCATAAGCCTTTGTGTCACAATTGCACAACCGAGGGATATGTTTCAATGCTAACAATAAAAACACTAAAGACACAATATTTTTAATCAAAACTGGGAATGCATGAGGAGCAAATTAAAATTTGATTCTTACCAATAAAGCTGATGGCTTCAGGGAAAAACTGTGAGAGGTTCTGGCTCCAGTGATCAGAGATGGGAATCTGCTTGTACTTAAACTCCCCGGCATTCTCGAACATGTTGGGGAGATTAGGGGTCACGTTCAAGATGTACTTGATGCCAAACTCCTCCAGGATATCCAGGTTTGTGGAGTCCTTAGCACAGCCCAGATACAGATGTGGAAGGATCTCCACGGGGAATGAGGGCTGGGGGTTGGAAAGGGGGCTGCCATCTGAGTCAGTTGCACTGCTTGGGTCTCGGTCGATATCCGACTCGATGTCCGAGGAGTCAGAGCTGATTCTGAGCCCTCCGAGACCCAGGACCTGGGAGGTTGGGGAACTGCTGCTTGAGGAACCGTCGAGGTTCGTCTCACACATTGCGGGAAAATCAGTTTGAAATTTGCTGAAGCCACCTGAAAATAGAAGTTAGAAGTTCTTTTACATCTGATGCATATTTATTTTTCATTTTAGTGGTGACTAATATCTTTGTTTCACTCTTAGCCATTCATTATTTTATTGCCTACTATGAACTATTTAAATATTAAATCCTGTTGCAACACAAATAAAGTATTGTGTTTATTGTTATTACTAGTTGCATTTTCAGAATGATTAATCCTTGATTTTGATGCAACTATGAAGCAGCCATTAAAGTCAGATGCAAATGTTACTGGGGAAATAACAAAACGTGACTAGTAGGAACTGCAACATGTAATTGTGAATGTGTCCACATTAGAAATGTAGAGAAATTATATTTTTGATAGTAACTGCAAATGATATTCTTAACCTCACGACTAGTTGTGTTTAACCAATTACGAAGTAGCCATTAAAATCAAAATGCAACTGGTGACACAAGCAATGCAAAATGGTAGCTTCTCTAGTATTATTAGCTCAACCTTAGATTTCCATCAAATTCAGATTTGAAACATACAACTAGTAACAAATCAACATCATTAAACGAATAGACATTAGTTAATACAAGTACTAAGTATATAATAAATGTCTGCAAGTAAAACTAAAAGACGTAATAATGACTACTACTGAGTAATTAAAAAATATTATAACCTAAATCAGATACGAATGCAAATGTTTCGATTTAAGAAGCAAAATCACCAAACTCGTTGGGAATGTACGTACCCTCGAGATAGAAAGCCTTGTAGCCCTCGTCCTTCATTCTCCTCAGCAGTAAACCCAACACGGAGCCGCCGTCGATGTTTTCATTCCACTCGCGGCTGTACTCGTCGTACAACACGATCGTGTCCGTCTTGCATCTCCGCGCGAACCTTTCCCTGTCTTCCCCGTTAGAAAGCAGAGACTTGATGGGCAGGTTGCCTTTCTTGAGTCGCCGGAGCATGAGG/TCT
- Variant Notes
-
predicted 63-amino-acid protein with no known protein domains
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 3 bp inserted / 2200 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
ATAAATGTTGTCAAAAATTTCTCCACGCAAATAAGTTGGAGTACAGTACACTCTGCCATCATTACCGAAGGGAAGTCTCGTCCCAAAAACAGGCAAGTCTTCATTGAAGACAAGAAGGGCACACCTAGAAAACATCAAGGTGCAAGTGCTAAACAAAACAAATGAGTATTTGTCATTGTTCAGTTCCAGTCAAGTCTCTTTGGCACACCAGCCCCAATAAATCGGATGCTCTTTTCATTTCCACAGTCTTTCCATGCTTAAATATGTATATATATATATATGTATATATATATAAAACAAACTACTTTGAAGAGTCTTGGAGATTTAGAGTCACATGATCTCTCTCCATTAAACAGCAGCGTAGAAGCTCTGGGCACACCACATGCCCCATCAGTGGCTACTCTGGTCGGCCGTCGTCTCAAGCCAACATCAATAACGTCAGGAATCCCTTGACTAGAGTCGAAAAACAGAAACTTGCATTTCACTCGAATCAAGTCATG
GCAGGACCTCACGTGGACTCGAGAGGGTCCAACTGAAAAACGTTGTGATTGGTTGGTGTGGTGAAGTACAGTGGCTGGGTTGGGGCCGGCACACGGTTATCACACGGACTCTTGAGTCCTAACGTGCGCTCAAAGTCCAAGAGTTGACCCATGAAGTTAAAGTTGGGCGAGATGTTCGACTTCTTCATTTTGACAATGTCATAAGCATCGTTCATGGACAGGTTGAGCTTCTGCATGAGGTACGCCACTGTTACAGTGACAGAACGACTGATGCCTGCAAGGCAGTGAACAAGCACGCCACACTTCAGTCCACGGGCCTCATCTGAGGGAAAAAAAGGACAAGATGATTAGTTATCTGTGTGCAACTTACTTATGAATATGCAATTGCACATAACCTCGGTTGTCAGAATTCATTACACTCCCTGCGCTGACAAAGGGGGCCTCATTCAGTGGGATTTCTAGTGCATGACTGAAAACAACTCGCCTATTTTGTCTGAGAATGTGACGTGGAAATGGGCTGTTAAGGTTAATCAAATGATCCTTCCGCTCGTCAGGTTACTTGACAATGGTACCATTTGGGCGTGTAAATGTAGAAGTCATGGCAGCGCCCTGTCAAGGCTAACAGGATGTCAACAGTGCCCTGTAAATGGTCCTCATTGTGTGGCGAAACATTGCTCTGTCCTAGATTACTTTCAATGCTGCTTGCTTCCTTCCTGTTGAGCTCAAATTACCGCCTCCCCCCTCCATCTCCCGTTTCATCATAAGCCTTTGTGTCACAATTGCACAACCGAGGGATATGTTTCAATGCTAACAATAAAAACACTAAAGACACAATATTTTTAATCAAAACTGGGAATGCATGAGGAGCAAATTAAAATTTGATTCTTACCAATAAAGCTGATGGCTTCAGGGAAAAACTGTGAGAGGTTCTGGCTCCAGTGATCAGAGATGGGAATCTGCTTGTACTTAAACTCCCCGGCATTCTCGAACATGTTGGGGAGATTAGGGGTCACGTTCAAGATGTACTTGATGCCAAACTCCTCCAGGATATCCAGGTTTGTGGAGTCCTTAGCACAGCCCAGATACAGATGTGGAAGGATCTCCACGGGGAATGAGGGCTGGGGGTTGGAAAGGGGGCTGCCATCTGAGTCAGTTGCACTGCTTGGGTCTCGGTCGATATCCGACTCGATGTCCGAGGAGTCAGAGCTGATTCTGAGCCCTCCGAGACCCAGGACCTGGGAGGTTGGGGAACTGCTGCTTGAGGAACCGTCGAGGTTCGTCTCACACATTGCGGGAAAATCAGTTTGAAATTTGCTGAAGCCACCTGAAAATAGAAGTTAGAAGTTCTTTTACATCTGATGCATATTTATTTTTCATTTTAGTGGTGACTAATATCTTTGTTTCACTCTTAGCCATTCATTATTTTATTGCCTACTATGAACTATTTAAATATTAAATCCTGTTGCAACACAAATAAAGTATTGTGTTTATTGTTATTACTAGTTGCATTTTCAGAATGATTAATCCTTGATTTTGATGCAACTATGAAGCAGCCATTAAAGTCAGATGCAAATGTTACTGGGGAAATAACAAAACGTGACTAGTAGGAACTGCAACATGTAATTGTGAATGTGTCCACATTAGAAATGTAGAGAAATTATATTTTTGATAGTAACTGCAAATGATATTCTTAACCTCACGACTAGTTGTGTTTAACCAATTACGAAGTAGCCATTAAAATCAAAATGCAACTGGTGACACAAGCAATGCAAAATGGTAGCTTCTCTAGTATTATTAGCTCAACCTTAGATTTCCATCAAATTCAGATTTGAAACATACAACTAGTAACAAATCAACATCATTAAACGAATAGACATTAGTTAATACAAGTACTAAGTATATAATAAATGTCTGCAAGTAAAACTAAAAGACGTAATAATGACTACTACTGAGTAATTAAAAAATATTATAACCTAAATCAGATACGAATGCAAATGTTTCGATTTAAGAAGCAAAATCACCAAACTCGTTGGGAATGTACGTACCCTCGAGATAGAAAGCCTTGTAGCCCTCGTCCTTCATTCTCCTCAGCAGTAAACCCAACACGGAGCCGCCGTCGATGTTTTCATTCCACTCGCGGCTGTACTCGTCGTACAACACGATCGTGTCCGTCTTGCATCTCCGCGCGAACCTTTCCCTGTCTTCCCCGTTAGAAAGCAGAGACTTGATGGGCAGGTTGCCTTTCTTGAGTCGCCGGAGCATGAGG/TCT CTCGGGATGGCCACGTTAATGGCCGTTTCGACGTGCGACGACTCGTACAGCTCTTGCGCTCGGCAGTCCATAACGAGCAA ... - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None