Genomic Feature

ud1

ID
ZDB-ALT-180319-12
Name
ud1
Synonyms
  • CH (1)
  • Charlie (1)
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
LeClair Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Delins
Variant Location
Chr 9: 56259105 - 56259115 (GRCz11) (1) Details
Nucleotide change
CAGAGGGAGAT/TACCCC
Variant Notes
The 9 bp sequence "ATCTCCCTC" was replaced by "GGGG".
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
6 bp inserted / 11 bp deleted in Exon 2 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
CTTAAACTGAAATAAACCTGTATAAAACCATATAAACACATGTGAATAAGCTAACATATGCAGGAAAATATCTGAAACAGACCAATCCTCTCTCTAAACTCTGTTTGTGCCGTCTAGTGGAAAATGAAGTGCTTTAGTGAGCTTTGGTGGCCTTCTAGTGTGACTGGAGGAGTGTTTATGACTGTTATGGTTCAGAATATGCGTTAGTTTAGTTCATTATATTCTCTCTGTCTCTCCTGCAAACTGTGAAGACGTCTCAGGAGGTCAAACTTGCTGCAATTATTGAAGTGAACAGAGGTAAATCAGCTGTATAGTAGTGCTGCTGATAATAATCATAATGAACAGAGTGTTGAAGAGTCATCTCTCTCTCTCTCTCTCAGACTGTGCGCTGTGAGCTGTGCGCTGACCTTGGCGAACTCGTCGAAGGTGATCTTCCCGTCCTGGTTGAGGTCCATGGTCCTGCTGATCTCCTGGATGATTTCTCGAACCCGGTACCCCGG
CAGAGGGAGAT/TACCCC TGGCGGCTTTAAACAGAGCGTTGAGCTCATCTGTGCTGATGTGACCGTTCCCATCCACATCTGCAGGACAAGGTCAAAGGTCAGGCCTCATATACACACTAATGACTTATTCTGTTAACTAAAATAAACTTTAATTTAATAAACAGAAATGAGTTGAATAGGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGTGTGTGTGTGCGTGCGCACATGTCTCTGTACTGACCGACTTTAGTGAAGGCCTCTCTGAGCTCCTCCATCTCCTCCGCTGAGATCTGTGCTGCTGCCATCTTCAACCCGCTATGATGATCACCTGATGACCAGAGGACTAGTTAGAGTCAGAACACTAGTTAACCGGAGTCAGGTCACTAATTAACCAGAGTCAGAGCACGTTGATCAGCAGGTGTGTGAGTGTGAGTGAGTCTGCGCTCCTCCTCTGTCCTGC
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations