Genomic Feature

psi7

ID
ZDB-ALT-150120-1
Name
psi7
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one point mutation (1)
Protocol
Lab of Origin
Piotrowski Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Point Mutation
Variant Location
Chr 13: 41367108 (GRCz11) (1) Details
Nucleotide change
A/C
Variant Notes
The psi7 allele encodes a splice site mutation in pcdh15a, causing a frameshift  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
T>G (1)
Transcript Consequence
Splice Site, Frameshift (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TGCCATCATGTCAATATGGACCAAAATCTCTGAGCAATATTTCTAGTACCTTGTTGAATCTAGGCCACAAAGCATTAAGGCAGTTCTGAAGGCAAAAAGGGGTCCAACCCAGTACTAGTAAGGTGTACATAATAAAGTGGCCAGTGAATGTATATGTACAGTAATTAATAACACAATTGATATATTTTTACTAATCAAGGCAAGGTTACAAAACTAAAATAAATGCAGGAAGTCAAAGTTTTACAACTGCACTATTAAAAGCAATTACAAATATAAAAAAATGTTGAAAAAAAGTTGAAGTCAAAACTATTCGCCTTCCTGCTCTTTTTCAAATTTTTCCTAATTGATGTTTAACAAAGCAAGGATTTTATTTTATTTTTTACAGTATTTCCTATAATACAACACCACAAACAGAAGGCACCTGGAAAACGCTGCTAAATCATTAATCACAATGAAGAAGTTTAGTGTAACTGCAGAAGCTCAGCCTGATCAAATGAAGT
A/C CCGGGTCATTTGGGTTATACTGAATGGCGTATTCAATCTGTCCGTTTGGTCCGTCGTCAATGTCCGTGGCTCCATTGTTTCCTGAGAAGCCGGTAAAGATAGTGGTGCCAACAGGAGTGAGCTGCAAAAAACAAAAATGATAAATAAAAAAAAACACATGAAACATACATCAGACCCTGGCGATACGCGAGTGTAACAATACAGCGACTCTGACAGTCCTCAGATGTGACCCAGCAGATGGTGTGTGTGTGTGTTTGTGTGTGTTTGTGTGTGTTTGTGCGCGTGTGTGTGTGTGTGTTTCTGTTGTATCAATCGAAGACACAGGGACAGAAGAGGTAGAAAAAAAATACAGAGAAAAGGCGAAACAAAGAGAAGACAACAAAAAAGCGGGAGTCAAAACGGAAAATGAGAGACAGGGAGAAAAACAATCATGTCTGAACATAAATACACTCACTACTGATATTAAAATAACAGGCGGGTCATTCTACAACTGCGGTGGC
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations