Gene

mycbp2

ID

ZDB-GENE-030616-132

Name

MYC binding protein 2

Symbol

mycbp2 Nomenclature History

Previous Names

esr
esrom (2)
fa97c06
ns:zft368
PAM (1)
si:busm1-12g7.1
si:dz12g7.1
si:dz256p4.1
til
tilsit
wu:fa97c06
xx:zft368
zft368

Type

protein_coding_gene

Location

Chr: 9 Mapping Details/Browsers

Description

Exhibits ubiquitin-protein transferase activity. Involved in several processes, including axon guidance; habenula development; and regulation of pteridine metabolic process. Localizes to cytoplasm. Is expressed in several structures, including eye; heart; integument; liver; and testis. Orthologous to human MYCBP2 (MYC binding protein 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 3 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 27 figures from 8 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With mycbp2 Human Ortholog

No data available

Associated With mycbp2 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001841	Zinc finger, RING-type
Domain	IPR004939	APC10/DOC domain
Domain	IPR012983	PHR
Homologous_superfamily	IPR008979	Galactose-binding-like domain superfamily
Homologous_superfamily	IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR014756	Immunoglobulin E-set
Homologous_superfamily	IPR038648	PHR domain superfamily
Repeat	IPR000408	Regulator of chromosome condensation, RCC1
Repeat	IPR017868	Filamin/ABP280 repeat-like

Domain Details Per Protein

Protein	Length	APC10/DOC domain	Filamin/ABP280 repeat-like	Galactose-binding-like domain superfamily	Immunoglobulin E-set	Immunoglobulin-like fold	PHR	PHR domain superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Regulator of chromosome condensation, RCC1	Zinc finger, RING/FYVE/PHD-type	Zinc finger, RING-type
UniProtKB:A0A8D3GM24 InterPro
UniProtKB:A0A8M3AVU9 InterPro	4769
UniProtKB:A0A8M6Z803 InterPro	4756
UniProtKB:A0A8M3B5G8 InterPro	4744
UniProtKB:A0A8M3B5H4 InterPro	4726
UniProtKB:A0A8M3BCC4 InterPro	4768
UniProtKB:A0A8M3AVW2 InterPro	4714
UniProtKB:F1RD40 InterPro	4574
UniProtKB:A0A8M3AVW4 InterPro	4670
UniProtKB:A0A8M3BCD1 InterPro	4681
UniProtKB:A0A8M3B2J0 InterPro	4736
UniProtKB:A0A8M3AVV4 InterPro	4735
UniProtKB:A0A8M3B2J4 InterPro	4723
UniProtKB:A0A8M3AVV8 InterPro	4733
UniProtKB:A0A8M3B5H8 InterPro	4668
UniProtKB:A0A8M3AVW8 InterPro	4656
UniProtKB:A0A8M3AVV1 InterPro	4761
UniProtKB:A0A8M3B2K0 InterPro	4658
UniProtKB:A0A8M9Q4H8 InterPro	4708
UniProtKB:A0A8M3BCC8 InterPro	4734

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	mycbp2-201 (1) Ensembl	Ensembl	15,337 nt	Select Tool
mRNA	ottdart00000001875 (1)	Havana	2,743 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	ottdart00000001995 (1)	Havana	9,225 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations