ZFIN Sequences for Gene: sox3

ZFIN ID: ZDB-GENE-980526-333

ZFIN ID: ZDB-GENE-980526-333

SEQUENCE INFORMATION

Gene Name:	SRY-box transcription factor 3
Gene Symbol:	sox3

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001001811 (1)	1781 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AB117960 (1)	1790 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC092845 (1)	1781 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC155138 (1)	1768 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AB242330 (1)	1711 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQQ01004727 (1)	1686 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AY316135 (1)	1407 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BG985680 (1)	993 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AI883602 (1)	512 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AI958228 (1)	510 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:CB923513 (1)	400 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AW778000 (1)	359 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AI957696 (1)	338 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AM422097 (1)	300 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AI959431 (1)	58 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX088596	142350 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX088596 (1)	67105 nt	Select Tool MegaBLAST Ensembl
	GenBank:CR848048 (2)	37116 nt	Select Tool MegaBLAST Ensembl
	GenBank:JBMGRA010000014 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl
Polypeptide	UniProtKB:A9JSZ3 (1)	300 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:Q6EJB7 (1)	300 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	RefSeq:NP_001001811 (1)	300 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	GenPept:AAH92845 (1)	300 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAI55139 (1)	300 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAP79985 (1)	300 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:BAD11369 (1)	300 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:BAE48584 (1)	300 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:Q6EJB7 (1)	300 aa	Select Tool ZFIN BLAST NCBI BLAST

sox3 CONTAINED IN

Marker	Type	Accession #	Length (nt/aa)	Analysis
[BAC] CH211-143L19 (1)	Genomic	GenBank:CR848048	37116	Select Tool MegaBLAST Ensembl
[BAC] CH211-285J6 (1)	Genomic	GenBank:BX088596	142350	Select Tool MegaBLAST Ensembl

sox3 ENCODES

Marker	Type	Accession #	Length (nt/aa)	Analysis
[CDNA] MGC:110279 (1)	RNA	GenBank:BC092845	1781	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[CDNA] MGC:174245 (1)	RNA	GenBank:BC155138	1768	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Polypeptide	GenPept:AAI55139	300	Select Tool ZFIN BLAST NCBI BLAST
[EST] cb493 (1)	RNA	GenBank:CB923513	400	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[EST] fc66h05 (1)	RNA	GenBank:AI883602	512	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[EST] fd02a08	RNA	GenBank:AI958228	510	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:AI957696	338	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[EST] ibd2036 (2)	RNA	GenBank:BG985680	993	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT