ZFIN Sequences for Gene: sox6

ZFIN ID: ZDB-GENE-081120-6

SEQUENCE INFORMATION

Gene Name:	SRY-box transcription factor 6
Gene Symbol:	sox6

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001123009 (1)	8175 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQH01020804 (1)	6384 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:EU532205 (1)	2350 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AB247646 (1)	2254 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:JN216841 (1)	763 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:JN216842 (1)	576 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AI877689 (1)	484 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AI793518 (1)	465 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AI723278 (1)	452 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX537340 (2)	192070 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX936464 (2)	167114 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX936427 (2)	65674 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:F8W2H3 (1)	768 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:B2CNY6 (1)		Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	RefSeq:NP_001116481 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	GenPept:ACB38138 (1)	768 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:BAE78525 (1)	686 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AEO16863 (1)	97 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AEO16862 (1)	80 aa	Select Tool ZFIN BLAST NCBI BLAST

sox6 CONTAINED IN

Marker	Type	Accession #	Length (nt/aa)	Analysis
[BAC] DKEY-48H11 (1)	Genomic	GenBank:BX936427	65674	Select Tool MegaBLAST Ensembl
[BAC] DKEY-246O4 (1)	Genomic	GenBank:BX936464	167114	Select Tool MegaBLAST Ensembl
[BAC] DKEYP-93A2 (1)	Genomic	GenBank:BX537340	192070	Select Tool MegaBLAST Ensembl

sox6 ENCODES

Marker	Type	Accession #	Length (nt/aa)	Analysis
[EST] fc35a10 (2)	RNA	GenBank:AI723278	452	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[EST] fc50e03 (2)	RNA	GenBank:AI877689	484	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:AI793518	465	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT